miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 5' -49 NC_006273.1 + 193869 0.69 0.997218
Target:  5'- cGGCGaaUGCAGCagacgGUGUucgauGGAGAugGCGUg -3'
miRNA:   3'- -CCGC--AUGUUG-----CACA-----CCUUUugCGCAa -5'
30199 5' -49 NC_006273.1 + 165911 0.69 0.997218
Target:  5'- uGGCuuUAUAACGUGUGGu-GACGaCGUUc -3'
miRNA:   3'- -CCGc-AUGUUGCACACCuuUUGC-GCAA- -5'
30199 5' -49 NC_006273.1 + 147429 0.69 0.99672
Target:  5'- cGGCGUcCGGCGUc-GGggGugGCGg- -3'
miRNA:   3'- -CCGCAuGUUGCAcaCCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 142449 0.69 0.996151
Target:  5'- cGCGUGC-GCGUGUGcGcacACGCGUg -3'
miRNA:   3'- cCGCAUGuUGCACAC-CuuuUGCGCAa -5'
30199 5' -49 NC_006273.1 + 34927 0.69 0.996151
Target:  5'- cGGCGcuggguUAGCG-GUGGAGGugGCGg- -3'
miRNA:   3'- -CCGCau----GUUGCaCACCUUUugCGCaa -5'
30199 5' -49 NC_006273.1 + 189375 0.69 0.995503
Target:  5'- aGGCG-GCAcGCGUGUGcGggGACGaCGg- -3'
miRNA:   3'- -CCGCaUGU-UGCACAC-CuuUUGC-GCaa -5'
30199 5' -49 NC_006273.1 + 54998 0.69 0.995503
Target:  5'- uGGCcUGCu-CGUagGUGGggGGCGCGUc -3'
miRNA:   3'- -CCGcAUGuuGCA--CACCuuUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 199730 0.7 0.994769
Target:  5'- uGGUGaaACAGCGUGUGGAcuguACGCu-- -3'
miRNA:   3'- -CCGCa-UGUUGCACACCUuu--UGCGcaa -5'
30199 5' -49 NC_006273.1 + 149241 0.7 0.99301
Target:  5'- aGGCGUugGACGg--GGAGgAGCGCa-- -3'
miRNA:   3'- -CCGCAugUUGCacaCCUU-UUGCGcaa -5'
30199 5' -49 NC_006273.1 + 37254 0.7 0.991969
Target:  5'- cGGCGgcgACGACGagGaGGAAGACGcCGUg -3'
miRNA:   3'- -CCGCa--UGUUGCa-CaCCUUUUGC-GCAa -5'
30199 5' -49 NC_006273.1 + 112199 0.71 0.988095
Target:  5'- cGCGUGCuucgGCGguUGcUGGAGGACGCGg- -3'
miRNA:   3'- cCGCAUGu---UGC--AC-ACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 32382 0.71 0.988095
Target:  5'- uGGCGUcuaucgucgccAC-ACGUGUGGAAGACaugGCGa- -3'
miRNA:   3'- -CCGCA-----------UGuUGCACACCUUUUG---CGCaa -5'
30199 5' -49 NC_006273.1 + 145623 0.71 0.986524
Target:  5'- gGGCGgcgguCGugGUgGUGGggGugGCGg- -3'
miRNA:   3'- -CCGCau---GUugCA-CACCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 73292 0.71 0.986524
Target:  5'- cGGUGUGCGgaGCGUGUcGGAGACGaCGa- -3'
miRNA:   3'- -CCGCAUGU--UGCACAcCUUUUGC-GCaa -5'
30199 5' -49 NC_006273.1 + 158212 0.71 0.982909
Target:  5'- aGGuCGUGCAGCGUGaGGcgcGGGCGCGc- -3'
miRNA:   3'- -CC-GCAUGUUGCACaCCu--UUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 113438 0.71 0.982909
Target:  5'- -aCGgGCAGCGagGUGGAGAACGUGUc -3'
miRNA:   3'- ccGCaUGUUGCa-CACCUUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 112860 0.71 0.982909
Target:  5'- cGGCGUGguCAACGcuuUGGAAAACGUGa- -3'
miRNA:   3'- -CCGCAU--GUUGCac-ACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 197999 0.72 0.976178
Target:  5'- cGCGgcugAGCGUGUGGAGGACGgGg- -3'
miRNA:   3'- cCGCaug-UUGCACACCUUUUGCgCaa -5'
30199 5' -49 NC_006273.1 + 193781 0.73 0.966729
Target:  5'- gGGUGUGCGAaaccgGUGUGGAAGccgaggaggcuaugGCGCGg- -3'
miRNA:   3'- -CCGCAUGUUg----CACACCUUU--------------UGCGCaa -5'
30199 5' -49 NC_006273.1 + 178922 0.73 0.953295
Target:  5'- cGCGaACGACGUGUGacGAGGACGUGg- -3'
miRNA:   3'- cCGCaUGUUGCACAC--CUUUUGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.