miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 5' -49 NC_006273.1 + 16 0.67 0.999597
Target:  5'- cGGCGgcgguCGGgGUGUGucGggGGCGCGg- -3'
miRNA:   3'- -CCGCau---GUUgCACAC--CuuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 4582 0.66 0.99967
Target:  5'- uGGCGacgGCAGCgGUGguggcgcUGGggGugGCGg- -3'
miRNA:   3'- -CCGCa--UGUUG-CAC-------ACCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 13059 0.66 0.999877
Target:  5'- cGGCGUACAguGCGcUGcauaGaAAGACGCGUg -3'
miRNA:   3'- -CCGCAUGU--UGC-ACa---CcUUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 32213 0.68 0.998629
Target:  5'- aGGuCGUAUucgucauuUGUGUGGGGAACGgGUg -3'
miRNA:   3'- -CC-GCAUGuu------GCACACCUUUUGCgCAa -5'
30199 5' -49 NC_006273.1 + 32382 0.71 0.988095
Target:  5'- uGGCGUcuaucgucgccAC-ACGUGUGGAAGACaugGCGa- -3'
miRNA:   3'- -CCGCA-----------UGuUGCACACCUUUUG---CGCaa -5'
30199 5' -49 NC_006273.1 + 34480 0.75 0.91889
Target:  5'- cGGUGUugAAaccgcCGUGUGGAAAGuCGCGg- -3'
miRNA:   3'- -CCGCAugUU-----GCACACCUUUU-GCGCaa -5'
30199 5' -49 NC_006273.1 + 34927 0.69 0.996151
Target:  5'- cGGCGcuggguUAGCG-GUGGAGGugGCGg- -3'
miRNA:   3'- -CCGCau----GUUGCaCACCUUUugCGCaa -5'
30199 5' -49 NC_006273.1 + 36931 0.68 0.998629
Target:  5'- cGGCGaucaGCAGcCGUgGUGGAGGaggcuACGCGUg -3'
miRNA:   3'- -CCGCa---UGUU-GCA-CACCUUU-----UGCGCAa -5'
30199 5' -49 NC_006273.1 + 37254 0.7 0.991969
Target:  5'- cGGCGgcgACGACGagGaGGAAGACGcCGUg -3'
miRNA:   3'- -CCGCa--UGUUGCa-CaCCUUUUGC-GCAa -5'
30199 5' -49 NC_006273.1 + 41507 0.66 0.999678
Target:  5'- aGGCGU-CGGCGUGaGGAugGCaGCGc- -3'
miRNA:   3'- -CCGCAuGUUGCACaCCUuuUG-CGCaa -5'
30199 5' -49 NC_006273.1 + 51922 0.66 0.999877
Target:  5'- cGCGUGCuGACGgacGUGG-GAGCGCa-- -3'
miRNA:   3'- cCGCAUG-UUGCa--CACCuUUUGCGcaa -5'
30199 5' -49 NC_006273.1 + 54998 0.69 0.995503
Target:  5'- uGGCcUGCu-CGUagGUGGggGGCGCGUc -3'
miRNA:   3'- -CCGcAUGuuGCA--CACCuuUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 68789 0.68 0.998866
Target:  5'- aGCGgucugGCAGCGacUGGAAcccgGACGCGUa -3'
miRNA:   3'- cCGCa----UGUUGCacACCUU----UUGCGCAa -5'
30199 5' -49 NC_006273.1 + 70677 0.75 0.900436
Target:  5'- cGGUG-GCGGCG-GUGGAGGGCGCGc- -3'
miRNA:   3'- -CCGCaUGUUGCaCACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 73292 0.71 0.986524
Target:  5'- cGGUGUGCGgaGCGUGUcGGAGACGaCGa- -3'
miRNA:   3'- -CCGCAUGU--UGCACAcCUUUUGC-GCaa -5'
30199 5' -49 NC_006273.1 + 85680 0.66 0.999877
Target:  5'- cGCGggUGACGuUGUGGAugcggGAACGCGc- -3'
miRNA:   3'- cCGCauGUUGC-ACACCU-----UUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 89277 0.8 0.688872
Target:  5'- cGCG-ACGACGUgGUGGAGAACGCGc- -3'
miRNA:   3'- cCGCaUGUUGCA-CACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 89431 0.67 0.999597
Target:  5'- aGGCGUaggccaGCAGCGgcUGGAAGGCcacgGCGUa -3'
miRNA:   3'- -CCGCA------UGUUGCacACCUUUUG----CGCAa -5'
30199 5' -49 NC_006273.1 + 89962 0.68 0.998629
Target:  5'- aGCGggAUGugGUcgcaGUGGAAAACGCGa- -3'
miRNA:   3'- cCGCa-UGUugCA----CACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 95199 0.67 0.999498
Target:  5'- cGGCGUgGCGGCGUcGUuuuucGGA--GCGCGUc -3'
miRNA:   3'- -CCGCA-UGUUGCA-CA-----CCUuuUGCGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.