miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 5' -49 NC_006273.1 + 112199 0.71 0.988095
Target:  5'- cGCGUGCuucgGCGguUGcUGGAGGACGCGg- -3'
miRNA:   3'- cCGCAUGu---UGC--AC-ACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 112860 0.71 0.982909
Target:  5'- cGGCGUGguCAACGcuuUGGAAAACGUGa- -3'
miRNA:   3'- -CCGCAU--GUUGCac-ACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 113438 0.71 0.982909
Target:  5'- -aCGgGCAGCGagGUGGAGAACGUGUc -3'
miRNA:   3'- ccGCaUGUUGCa-CACCUUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 116788 0.74 0.949115
Target:  5'- cGGCGcUGCGACGacGUGGAGGcCGCGa- -3'
miRNA:   3'- -CCGC-AUGUUGCa-CACCUUUuGCGCaa -5'
30199 5' -49 NC_006273.1 + 118015 0.68 0.998866
Target:  5'- -aCGUcaauaGCGACG-GUGGAAGugGCGg- -3'
miRNA:   3'- ccGCA-----UGUUGCaCACCUUUugCGCaa -5'
30199 5' -49 NC_006273.1 + 120597 0.68 0.998027
Target:  5'- uGGCG-GCGACGUuUGGGuuGCGCa-- -3'
miRNA:   3'- -CCGCaUGUUGCAcACCUuuUGCGcaa -5'
30199 5' -49 NC_006273.1 + 123501 0.67 0.999597
Target:  5'- cGGCGUACuGCaggcUGUGGguGGCGUGc- -3'
miRNA:   3'- -CCGCAUGuUGc---ACACCuuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 136782 0.67 0.999498
Target:  5'- cGCGUACgGACGaGUGGAAGGgugccggugucuCGCGUc -3'
miRNA:   3'- cCGCAUG-UUGCaCACCUUUU------------GCGCAa -5'
30199 5' -49 NC_006273.1 + 140685 0.67 0.999237
Target:  5'- aGGCG-ACGACGgcggGUGGugGugGUGg- -3'
miRNA:   3'- -CCGCaUGUUGCa---CACCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 142449 0.69 0.996151
Target:  5'- cGCGUGC-GCGUGUGcGcacACGCGUg -3'
miRNA:   3'- cCGCAUGuUGCACAC-CuuuUGCGCAa -5'
30199 5' -49 NC_006273.1 + 144541 0.68 0.998027
Target:  5'- uGCGcGCAGCGcuuuUGUGGA-GGCGCGa- -3'
miRNA:   3'- cCGCaUGUUGC----ACACCUuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 145623 0.71 0.986524
Target:  5'- gGGCGgcgguCGugGUgGUGGggGugGCGg- -3'
miRNA:   3'- -CCGCau---GUugCA-CACCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 147429 0.69 0.99672
Target:  5'- cGGCGUcCGGCGUc-GGggGugGCGg- -3'
miRNA:   3'- -CCGCAuGUUGCAcaCCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 147987 0.68 0.998351
Target:  5'- cGGCG-GCGGCGgugGUGGAGGAgguUGCGc- -3'
miRNA:   3'- -CCGCaUGUUGCa--CACCUUUU---GCGCaa -5'
30199 5' -49 NC_006273.1 + 148180 0.66 0.999794
Target:  5'- --aGUGCAcgagccGCGUGUGGucacgcaugccgcGGAACGCGUc -3'
miRNA:   3'- ccgCAUGU------UGCACACC-------------UUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 149241 0.7 0.99301
Target:  5'- aGGCGUugGACGg--GGAGgAGCGCa-- -3'
miRNA:   3'- -CCGCAugUUGCacaCCUU-UUGCGcaa -5'
30199 5' -49 NC_006273.1 + 149554 0.67 0.999498
Target:  5'- aGCG-GCGGCG-GUGGuAGugGCGUg -3'
miRNA:   3'- cCGCaUGUUGCaCACCuUUugCGCAa -5'
30199 5' -49 NC_006273.1 + 154265 0.76 0.864909
Target:  5'- cGUGUACGAggucCGUGUGGAuccgcuGACGCGUUu -3'
miRNA:   3'- cCGCAUGUU----GCACACCUu-----UUGCGCAA- -5'
30199 5' -49 NC_006273.1 + 156422 0.66 0.999799
Target:  5'- cGGCGUACAucccGCGUG-GGucagucGACgGCGUc -3'
miRNA:   3'- -CCGCAUGU----UGCACaCCuu----UUG-CGCAa -5'
30199 5' -49 NC_006273.1 + 157376 0.66 0.999842
Target:  5'- uGCGUcgccuGCGACGgcggGUGGAGAugagGCgGCGUg -3'
miRNA:   3'- cCGCA-----UGUUGCa---CACCUUU----UG-CGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.