miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 5' -49 NC_006273.1 + 234847 0.67 0.999597
Target:  5'- cGGCGgcgguCGGgGUGUGucGggGGCGCGg- -3'
miRNA:   3'- -CCGCau---GUUgCACAC--CuuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 233352 0.66 0.999799
Target:  5'- gGGCGUGgAGa-UGUGGAGAugGgGg- -3'
miRNA:   3'- -CCGCAUgUUgcACACCUUUugCgCaa -5'
30199 5' -49 NC_006273.1 + 219849 0.66 0.999877
Target:  5'- cGGUGUAgcacCAACGUGuUGGGguccAGACGCu-- -3'
miRNA:   3'- -CCGCAU----GUUGCAC-ACCU----UUUGCGcaa -5'
30199 5' -49 NC_006273.1 + 211846 0.66 0.999877
Target:  5'- cGGCcgACGAagUGUGUGaAGAGCGCGUg -3'
miRNA:   3'- -CCGcaUGUU--GCACACcUUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 210818 0.67 0.999237
Target:  5'- gGGCGcccagACAACGUGacaaGGAAagcccgGACGCGa- -3'
miRNA:   3'- -CCGCa----UGUUGCACa---CCUU------UUGCGCaa -5'
30199 5' -49 NC_006273.1 + 200266 0.67 0.999237
Target:  5'- cGCGUACGACGUcaGcGAGuACGUGUUu -3'
miRNA:   3'- cCGCAUGUUGCAcaC-CUUuUGCGCAA- -5'
30199 5' -49 NC_006273.1 + 199730 0.7 0.994769
Target:  5'- uGGUGaaACAGCGUGUGGAcuguACGCu-- -3'
miRNA:   3'- -CCGCa-UGUUGCACACCUuu--UGCGcaa -5'
30199 5' -49 NC_006273.1 + 197999 0.72 0.976178
Target:  5'- cGCGgcugAGCGUGUGGAGGACGgGg- -3'
miRNA:   3'- cCGCaug-UUGCACACCUUUUGCgCaa -5'
30199 5' -49 NC_006273.1 + 194909 0.67 0.999597
Target:  5'- cGGCGgcgguCGGgGUGUGucGggGGCGCGg- -3'
miRNA:   3'- -CCGCau---GUUgCACAC--CuuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 193869 0.69 0.997218
Target:  5'- cGGCGaaUGCAGCagacgGUGUucgauGGAGAugGCGUg -3'
miRNA:   3'- -CCGC--AUGUUG-----CACA-----CCUUUugCGCAa -5'
30199 5' -49 NC_006273.1 + 193781 0.73 0.966729
Target:  5'- gGGUGUGCGAaaccgGUGUGGAAGccgaggaggcuaugGCGCGg- -3'
miRNA:   3'- -CCGCAUGUUg----CACACCUUU--------------UGCGCaa -5'
30199 5' -49 NC_006273.1 + 193359 0.67 0.999498
Target:  5'- gGGCGgAUAACGUGUugcGGAucGugGCGa- -3'
miRNA:   3'- -CCGCaUGUUGCACA---CCUu-UugCGCaa -5'
30199 5' -49 NC_006273.1 + 192289 1.09 0.019982
Target:  5'- cGGCGUACAACGUGUGGAAAACGCGUUg -3'
miRNA:   3'- -CCGCAUGUUGCACACCUUUUGCGCAA- -5'
30199 5' -49 NC_006273.1 + 189849 0.66 0.999799
Target:  5'- uGGCaucUGCGGCaUGgcgggGGGAGACGCGUc -3'
miRNA:   3'- -CCGc--AUGUUGcACa----CCUUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 189375 0.69 0.995503
Target:  5'- aGGCG-GCAcGCGUGUGcGggGACGaCGg- -3'
miRNA:   3'- -CCGCaUGU-UGCACAC-CuuUUGC-GCaa -5'
30199 5' -49 NC_006273.1 + 179776 0.66 0.999842
Target:  5'- cGGCG-GCGACGUG-GGu---CGCGa- -3'
miRNA:   3'- -CCGCaUGUUGCACaCCuuuuGCGCaa -5'
30199 5' -49 NC_006273.1 + 178922 0.73 0.953295
Target:  5'- cGCGaACGACGUGUGacGAGGACGUGg- -3'
miRNA:   3'- cCGCaUGUUGCACAC--CUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 178825 0.67 0.999067
Target:  5'- gGGCGgcgGCGGCGga-GGAGGAgGCGg- -3'
miRNA:   3'- -CCGCa--UGUUGCacaCCUUUUgCGCaa -5'
30199 5' -49 NC_006273.1 + 177348 0.66 0.999678
Target:  5'- cGGCGauccaaAACGacGUGGAAAugGCGg- -3'
miRNA:   3'- -CCGCaug---UUGCa-CACCUUUugCGCaa -5'
30199 5' -49 NC_006273.1 + 172822 0.68 0.998027
Target:  5'- gGGCG-ACAgguaaagguucACG-GUGGAGAuGCGCGUg -3'
miRNA:   3'- -CCGCaUGU-----------UGCaCACCUUU-UGCGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.