miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 5' -49 NC_006273.1 + 136782 0.67 0.999498
Target:  5'- cGCGUACgGACGaGUGGAAGGgugccggugucuCGCGUc -3'
miRNA:   3'- cCGCAUG-UUGCaCACCUUUU------------GCGCAa -5'
30199 5' -49 NC_006273.1 + 34927 0.69 0.996151
Target:  5'- cGGCGcuggguUAGCG-GUGGAGGugGCGg- -3'
miRNA:   3'- -CCGCau----GUUGCaCACCUUUugCGCaa -5'
30199 5' -49 NC_006273.1 + 193869 0.69 0.997218
Target:  5'- cGGCGaaUGCAGCagacgGUGUucgauGGAGAugGCGUg -3'
miRNA:   3'- -CCGC--AUGUUG-----CACA-----CCUUUugCGCAa -5'
30199 5' -49 NC_006273.1 + 120597 0.68 0.998027
Target:  5'- uGGCG-GCGACGUuUGGGuuGCGCa-- -3'
miRNA:   3'- -CCGCaUGUUGCAcACCUuuUGCGcaa -5'
30199 5' -49 NC_006273.1 + 166150 0.68 0.998629
Target:  5'- gGGCGggAgGACGcGUGG-GAGCGCGg- -3'
miRNA:   3'- -CCGCa-UgUUGCaCACCuUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 68789 0.68 0.998866
Target:  5'- aGCGgucugGCAGCGacUGGAAcccgGACGCGUa -3'
miRNA:   3'- cCGCa----UGUUGCacACCUU----UUGCGCAa -5'
30199 5' -49 NC_006273.1 + 118015 0.68 0.998866
Target:  5'- -aCGUcaauaGCGACG-GUGGAAGugGCGg- -3'
miRNA:   3'- ccGCA-----UGUUGCaCACCUUUugCGCaa -5'
30199 5' -49 NC_006273.1 + 140685 0.67 0.999237
Target:  5'- aGGCG-ACGACGgcggGUGGugGugGUGg- -3'
miRNA:   3'- -CCGCaUGUUGCa---CACCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 210818 0.67 0.999237
Target:  5'- gGGCGcccagACAACGUGacaaGGAAagcccgGACGCGa- -3'
miRNA:   3'- -CCGCa----UGUUGCACa---CCUU------UUGCGCaa -5'
30199 5' -49 NC_006273.1 + 54998 0.69 0.995503
Target:  5'- uGGCcUGCu-CGUagGUGGggGGCGCGUc -3'
miRNA:   3'- -CCGcAUGuuGCA--CACCuuUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 199730 0.7 0.994769
Target:  5'- uGGUGaaACAGCGUGUGGAcuguACGCu-- -3'
miRNA:   3'- -CCGCa-UGUUGCACACCUuu--UGCGcaa -5'
30199 5' -49 NC_006273.1 + 37254 0.7 0.991969
Target:  5'- cGGCGgcgACGACGagGaGGAAGACGcCGUg -3'
miRNA:   3'- -CCGCa--UGUUGCa-CaCCUUUUGC-GCAa -5'
30199 5' -49 NC_006273.1 + 89277 0.8 0.688872
Target:  5'- cGCG-ACGACGUgGUGGAGAACGCGc- -3'
miRNA:   3'- cCGCaUGUUGCA-CACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 171571 0.74 0.940028
Target:  5'- cGGCGUGCcGCugccgGUGgaaggGGAAGACGCGg- -3'
miRNA:   3'- -CCGCAUGuUG-----CACa----CCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 116788 0.74 0.949115
Target:  5'- cGGCGcUGCGACGacGUGGAGGcCGCGa- -3'
miRNA:   3'- -CCGC-AUGUUGCa-CACCUUUuGCGCaa -5'
30199 5' -49 NC_006273.1 + 178922 0.73 0.953295
Target:  5'- cGCGaACGACGUGUGacGAGGACGUGg- -3'
miRNA:   3'- cCGCaUGUUGCACAC--CUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 193781 0.73 0.966729
Target:  5'- gGGUGUGCGAaaccgGUGUGGAAGccgaggaggcuaugGCGCGg- -3'
miRNA:   3'- -CCGCAUGUUg----CACACCUUU--------------UGCGCaa -5'
30199 5' -49 NC_006273.1 + 112860 0.71 0.982909
Target:  5'- cGGCGUGguCAACGcuuUGGAAAACGUGa- -3'
miRNA:   3'- -CCGCAU--GUUGCac-ACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 73292 0.71 0.986524
Target:  5'- cGGUGUGCGgaGCGUGUcGGAGACGaCGa- -3'
miRNA:   3'- -CCGCAUGU--UGCACAcCUUUUGC-GCaa -5'
30199 5' -49 NC_006273.1 + 112199 0.71 0.988095
Target:  5'- cGCGUGCuucgGCGguUGcUGGAGGACGCGg- -3'
miRNA:   3'- cCGCAUGu---UGC--AC-ACCUUUUGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.