miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 5' -49 NC_006273.1 + 154265 0.76 0.864909
Target:  5'- cGUGUACGAggucCGUGUGGAuccgcuGACGCGUUu -3'
miRNA:   3'- cCGCAUGUU----GCACACCUu-----UUGCGCAA- -5'
30199 5' -49 NC_006273.1 + 172822 0.68 0.998027
Target:  5'- gGGCG-ACAgguaaagguucACG-GUGGAGAuGCGCGUg -3'
miRNA:   3'- -CCGCaUGU-----------UGCaCACCUUU-UGCGCAa -5'
30199 5' -49 NC_006273.1 + 32213 0.68 0.998629
Target:  5'- aGGuCGUAUucgucauuUGUGUGGGGAACGgGUg -3'
miRNA:   3'- -CC-GCAUGuu------GCACACCUUUUGCgCAa -5'
30199 5' -49 NC_006273.1 + 211846 0.66 0.999877
Target:  5'- cGGCcgACGAagUGUGUGaAGAGCGCGUg -3'
miRNA:   3'- -CCGcaUGUU--GCACACcUUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 197999 0.72 0.976178
Target:  5'- cGCGgcugAGCGUGUGGAGGACGgGg- -3'
miRNA:   3'- cCGCaug-UUGCACACCUUUUGCgCaa -5'
30199 5' -49 NC_006273.1 + 158212 0.71 0.982909
Target:  5'- aGGuCGUGCAGCGUGaGGcgcGGGCGCGc- -3'
miRNA:   3'- -CC-GCAUGUUGCACaCCu--UUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 145623 0.71 0.986524
Target:  5'- gGGCGgcgguCGugGUgGUGGggGugGCGg- -3'
miRNA:   3'- -CCGCau---GUugCA-CACCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 32382 0.71 0.988095
Target:  5'- uGGCGUcuaucgucgccAC-ACGUGUGGAAGACaugGCGa- -3'
miRNA:   3'- -CCGCA-----------UGuUGCACACCUUUUG---CGCaa -5'
30199 5' -49 NC_006273.1 + 142449 0.69 0.996151
Target:  5'- cGCGUGC-GCGUGUGcGcacACGCGUg -3'
miRNA:   3'- cCGCAUGuUGCACAC-CuuuUGCGCAa -5'
30199 5' -49 NC_006273.1 + 163420 0.68 0.998027
Target:  5'- uGCGUAC-GCGUGggcUGGAAAGC-CGUg -3'
miRNA:   3'- cCGCAUGuUGCAC---ACCUUUUGcGCAa -5'
30199 5' -49 NC_006273.1 + 165911 0.69 0.997218
Target:  5'- uGGCuuUAUAACGUGUGGu-GACGaCGUUc -3'
miRNA:   3'- -CCGc-AUGUUGCACACCuuUUGC-GCAA- -5'
30199 5' -49 NC_006273.1 + 189375 0.69 0.995503
Target:  5'- aGGCG-GCAcGCGUGUGcGggGACGaCGg- -3'
miRNA:   3'- -CCGCaUGU-UGCACAC-CuuUUGC-GCaa -5'
30199 5' -49 NC_006273.1 + 70677 0.75 0.900436
Target:  5'- cGGUG-GCGGCG-GUGGAGGGCGCGc- -3'
miRNA:   3'- -CCGCaUGUUGCaCACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 157820 0.68 0.997651
Target:  5'- cGGCGUGCAuaaagggcacgAUGUcGUGGuuAGCgGCGUg -3'
miRNA:   3'- -CCGCAUGU-----------UGCA-CACCuuUUG-CGCAa -5'
30199 5' -49 NC_006273.1 + 34480 0.75 0.91889
Target:  5'- cGGUGUugAAaccgcCGUGUGGAAAGuCGCGg- -3'
miRNA:   3'- -CCGCAugUU-----GCACACCUUUU-GCGCaa -5'
30199 5' -49 NC_006273.1 + 149241 0.7 0.99301
Target:  5'- aGGCGUugGACGg--GGAGgAGCGCa-- -3'
miRNA:   3'- -CCGCAugUUGCacaCCUU-UUGCGcaa -5'
30199 5' -49 NC_006273.1 + 144541 0.68 0.998027
Target:  5'- uGCGcGCAGCGcuuuUGUGGA-GGCGCGa- -3'
miRNA:   3'- cCGCaUGUUGC----ACACCUuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 147987 0.68 0.998351
Target:  5'- cGGCG-GCGGCGgugGUGGAGGAgguUGCGc- -3'
miRNA:   3'- -CCGCaUGUUGCa--CACCUUUU---GCGCaa -5'
30199 5' -49 NC_006273.1 + 164703 0.74 0.935116
Target:  5'- cGCGUACAACgGUGUGGuccugUGCGUUg -3'
miRNA:   3'- cCGCAUGUUG-CACACCuuuu-GCGCAA- -5'
30199 5' -49 NC_006273.1 + 113438 0.71 0.982909
Target:  5'- -aCGgGCAGCGagGUGGAGAACGUGUc -3'
miRNA:   3'- ccGCaUGUUGCa-CACCUUUUGCGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.