miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30200 3' -53.4 NC_006273.1 + 229024 0.66 0.9893
Target:  5'- uGUGGGGggGGGGUacuuAUAGCGUGc- -3'
miRNA:   3'- cCACUCCaaCCCCGcc--UAUUGCACaa -5'
30200 3' -53.4 NC_006273.1 + 51560 0.66 0.986348
Target:  5'- cGGgGGGGUggUGGcGGCGGAgGACGgagggGUg -3'
miRNA:   3'- -CCaCUCCA--ACC-CCGCCUaUUGCa----CAa -5'
30200 3' -53.4 NC_006273.1 + 145569 0.66 0.984655
Target:  5'- cGGUGcuGGcgGGGGUGGuggacggGACGUGa- -3'
miRNA:   3'- -CCACu-CCaaCCCCGCCua-----UUGCACaa -5'
30200 3' -53.4 NC_006273.1 + 54936 0.67 0.978616
Target:  5'- cGGUGggcugcagucGGGUggUGGcGGCGG-UGGCGUGg- -3'
miRNA:   3'- -CCAC----------UCCA--ACC-CCGCCuAUUGCACaa -5'
30200 3' -53.4 NC_006273.1 + 141699 0.67 0.976256
Target:  5'- aGGgggGGGGUgagGGGGgGGGUuACGgugGUUc -3'
miRNA:   3'- -CCa--CUCCAa--CCCCgCCUAuUGCa--CAA- -5'
30200 3' -53.4 NC_006273.1 + 233950 0.67 0.976256
Target:  5'- -aUGAGGUUGuGuGGUgcugugguguaaGGGUAACGUGUg -3'
miRNA:   3'- ccACUCCAAC-C-CCG------------CCUAUUGCACAa -5'
30200 3' -53.4 NC_006273.1 + 112990 0.68 0.957983
Target:  5'- cGGUGGuGGUgugugaUGGGGUGuGGUGACG-GUg -3'
miRNA:   3'- -CCACU-CCA------ACCCCGC-CUAUUGCaCAa -5'
30200 3' -53.4 NC_006273.1 + 105762 0.69 0.936782
Target:  5'- gGGUGAGGUUGcaGGCGcGAacgugcagggGACGUGUa -3'
miRNA:   3'- -CCACUCCAACc-CCGC-CUa---------UUGCACAa -5'
30200 3' -53.4 NC_006273.1 + 40793 0.69 0.936782
Target:  5'- cGGgcgcucgGGGGUUGGcGGCGGGUGuuucuACGgUGUUu -3'
miRNA:   3'- -CCa------CUCCAACC-CCGCCUAU-----UGC-ACAA- -5'
30200 3' -53.4 NC_006273.1 + 855 0.69 0.936782
Target:  5'- cGGgcgcucgGGGGUUGGcGGCGGGUGuuucuACGgUGUUu -3'
miRNA:   3'- -CCa------CUCCAACC-CCGCCUAU-----UGC-ACAA- -5'
30200 3' -53.4 NC_006273.1 + 56272 0.7 0.921274
Target:  5'- cGGUGGcuGGUcugcUGGGGCGGGUAcggccGCGgGUg -3'
miRNA:   3'- -CCACU--CCA----ACCCCGCCUAU-----UGCaCAa -5'
30200 3' -53.4 NC_006273.1 + 233332 0.71 0.890758
Target:  5'- uGGUG-GGcUGGGGUGGuuuugGGCGUGg- -3'
miRNA:   3'- -CCACuCCaACCCCGCCua---UUGCACaa -5'
30200 3' -53.4 NC_006273.1 + 193348 1.08 0.008366
Target:  5'- aGGUGAGGUUGGGGCGGAUAACGUGUUg -3'
miRNA:   3'- -CCACUCCAACCCCGCCUAUUGCACAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.