miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30200 5' -52.8 NC_006273.1 + 222026 0.66 0.995702
Target:  5'- --cGGACGugUCGUCUuccucuugaUCCUCUUCUUCGu -3'
miRNA:   3'- gcuCUUGC--AGCAGG---------AGGGGAAGAAGU- -5'
30200 5' -52.8 NC_006273.1 + 196856 0.66 0.993395
Target:  5'- gGuGGugccCGUCGUCCucgucUCCCCUcCUUCGu -3'
miRNA:   3'- gCuCUu---GCAGCAGG-----AGGGGAaGAAGU- -5'
30200 5' -52.8 NC_006273.1 + 52680 0.66 0.992436
Target:  5'- --cGAGCcUCGUUUUCUUCUUCUUCAu -3'
miRNA:   3'- gcuCUUGcAGCAGGAGGGGAAGAAGU- -5'
30200 5' -52.8 NC_006273.1 + 89705 0.67 0.991369
Target:  5'- -------aUCGUCCUCCCCUUCgUCc -3'
miRNA:   3'- gcucuugcAGCAGGAGGGGAAGaAGu -5'
30200 5' -52.8 NC_006273.1 + 226309 0.67 0.987445
Target:  5'- ---aGACGUCGUCgUCCUCguccUCUUCGu -3'
miRNA:   3'- gcucUUGCAGCAGgAGGGGa---AGAAGU- -5'
30200 5' -52.8 NC_006273.1 + 166041 0.69 0.970299
Target:  5'- uCGu---CGUCGUCCUCCaguucuggcUCUUCUUCAu -3'
miRNA:   3'- -GCucuuGCAGCAGGAGG---------GGAAGAAGU- -5'
30200 5' -52.8 NC_006273.1 + 63789 0.69 0.960809
Target:  5'- uCGAGAcccGCGgugcuaccgCGUCUUCCCCUUCc--- -3'
miRNA:   3'- -GCUCU---UGCa--------GCAGGAGGGGAAGaagu -5'
30200 5' -52.8 NC_006273.1 + 189452 0.7 0.949404
Target:  5'- gGAGcucguCGUCGUCCUCCUCUcccUCgUCGu -3'
miRNA:   3'- gCUCuu---GCAGCAGGAGGGGA---AGaAGU- -5'
30200 5' -52.8 NC_006273.1 + 150050 0.71 0.909006
Target:  5'- gCGAGAGuuauUGUCGUCCUCCaCCg-CUUCc -3'
miRNA:   3'- -GCUCUU----GCAGCAGGAGG-GGaaGAAGu -5'
30200 5' -52.8 NC_006273.1 + 199630 0.73 0.846414
Target:  5'- -cGGAGCG-CGUCUUCCCCggCUUUAg -3'
miRNA:   3'- gcUCUUGCaGCAGGAGGGGaaGAAGU- -5'
30200 5' -52.8 NC_006273.1 + 119056 0.74 0.787063
Target:  5'- gGAGAGgucaucuuCGUCGUCCucuUCCUCUUCUUCc -3'
miRNA:   3'- gCUCUU--------GCAGCAGG---AGGGGAAGAAGu -5'
30200 5' -52.8 NC_006273.1 + 22604 0.75 0.73084
Target:  5'- cCGGGGAccuCGUUGUCCUCUCCUcCUUCu -3'
miRNA:   3'- -GCUCUU---GCAGCAGGAGGGGAaGAAGu -5'
30200 5' -52.8 NC_006273.1 + 41137 0.76 0.691586
Target:  5'- cCGAGGAguCGUCGUCUUCCuCCUcgcugUCUUCGa -3'
miRNA:   3'- -GCUCUU--GCAGCAGGAGG-GGA-----AGAAGU- -5'
30200 5' -52.8 NC_006273.1 + 193385 1.09 0.010547
Target:  5'- gCGAGAACGUCGUCCUCCCCUUCUUCAc -3'
miRNA:   3'- -GCUCUUGCAGCAGGAGGGGAAGAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.