Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30200 | 5' | -52.8 | NC_006273.1 | + | 196856 | 0.66 | 0.993395 |
Target: 5'- gGuGGugccCGUCGUCCucgucUCCCCUcCUUCGu -3' miRNA: 3'- gCuCUu---GCAGCAGG-----AGGGGAaGAAGU- -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 222026 | 0.66 | 0.995702 |
Target: 5'- --cGGACGugUCGUCUuccucuugaUCCUCUUCUUCGu -3' miRNA: 3'- gcuCUUGC--AGCAGG---------AGGGGAAGAAGU- -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 52680 | 0.66 | 0.992436 |
Target: 5'- --cGAGCcUCGUUUUCUUCUUCUUCAu -3' miRNA: 3'- gcuCUUGcAGCAGGAGGGGAAGAAGU- -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 89705 | 0.67 | 0.991369 |
Target: 5'- -------aUCGUCCUCCCCUUCgUCc -3' miRNA: 3'- gcucuugcAGCAGGAGGGGAAGaAGu -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 226309 | 0.67 | 0.987445 |
Target: 5'- ---aGACGUCGUCgUCCUCguccUCUUCGu -3' miRNA: 3'- gcucUUGCAGCAGgAGGGGa---AGAAGU- -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 166041 | 0.69 | 0.970299 |
Target: 5'- uCGu---CGUCGUCCUCCaguucuggcUCUUCUUCAu -3' miRNA: 3'- -GCucuuGCAGCAGGAGG---------GGAAGAAGU- -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 63789 | 0.69 | 0.960809 |
Target: 5'- uCGAGAcccGCGgugcuaccgCGUCUUCCCCUUCc--- -3' miRNA: 3'- -GCUCU---UGCa--------GCAGGAGGGGAAGaagu -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 189452 | 0.7 | 0.949404 |
Target: 5'- gGAGcucguCGUCGUCCUCCUCUcccUCgUCGu -3' miRNA: 3'- gCUCuu---GCAGCAGGAGGGGA---AGaAGU- -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 150050 | 0.71 | 0.909006 |
Target: 5'- gCGAGAGuuauUGUCGUCCUCCaCCg-CUUCc -3' miRNA: 3'- -GCUCUU----GCAGCAGGAGG-GGaaGAAGu -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 199630 | 0.73 | 0.846414 |
Target: 5'- -cGGAGCG-CGUCUUCCCCggCUUUAg -3' miRNA: 3'- gcUCUUGCaGCAGGAGGGGaaGAAGU- -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 119056 | 0.74 | 0.787063 |
Target: 5'- gGAGAGgucaucuuCGUCGUCCucuUCCUCUUCUUCc -3' miRNA: 3'- gCUCUU--------GCAGCAGG---AGGGGAAGAAGu -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 22604 | 0.75 | 0.73084 |
Target: 5'- cCGGGGAccuCGUUGUCCUCUCCUcCUUCu -3' miRNA: 3'- -GCUCUU---GCAGCAGGAGGGGAaGAAGu -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 41137 | 0.76 | 0.691586 |
Target: 5'- cCGAGGAguCGUCGUCUUCCuCCUcgcugUCUUCGa -3' miRNA: 3'- -GCUCUU--GCAGCAGGAGG-GGA-----AGAAGU- -5' |
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30200 | 5' | -52.8 | NC_006273.1 | + | 193385 | 1.09 | 0.010547 |
Target: 5'- gCGAGAACGUCGUCCUCCCCUUCUUCAc -3' miRNA: 3'- -GCUCUUGCAGCAGGAGGGGAAGAAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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