miRNA display CGI


Results 1 - 20 of 497 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30201 3' -53.9 NC_006273.1 + 89710 0.66 0.990086
Target:  5'- cGCuaGCGCCCagcauGCGAcCGCCG-CGCc -3'
miRNA:   3'- uCG--UGCGGGcuuu-UGUU-GCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 87959 0.66 0.990086
Target:  5'- cGcCACcCCCGAcgccGGACGccGCGCCGaCGCc -3'
miRNA:   3'- uC-GUGcGGGCU----UUUGU--UGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 95244 0.66 0.990086
Target:  5'- -uUugGCCCGAGAccCAcCGCCGUucuuuuccccCGCg -3'
miRNA:   3'- ucGugCGGGCUUUu-GUuGCGGCA----------GCG- -5'
30201 3' -53.9 NC_006273.1 + 88344 0.66 0.990086
Target:  5'- gAGCACGUCggccaGAcgcguagccaagAGAUAGCGCUGgCGCa -3'
miRNA:   3'- -UCGUGCGGg----CU------------UUUGUUGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 64311 0.66 0.990086
Target:  5'- aGGCGC-CCUGGGAAuCGGCGCCccaaccGcCGCg -3'
miRNA:   3'- -UCGUGcGGGCUUUU-GUUGCGG------CaGCG- -5'
30201 3' -53.9 NC_006273.1 + 105690 0.66 0.990086
Target:  5'- cAGCGCGCacCCGuu--CGACGUUaacggGUCGCg -3'
miRNA:   3'- -UCGUGCG--GGCuuuuGUUGCGG-----CAGCG- -5'
30201 3' -53.9 NC_006273.1 + 131408 0.66 0.990086
Target:  5'- cGCACGCCUccauGGGCGAguuCGCgCGUCuGCu -3'
miRNA:   3'- uCGUGCGGGcu--UUUGUU---GCG-GCAG-CG- -5'
30201 3' -53.9 NC_006273.1 + 201940 0.66 0.990086
Target:  5'- uGCACGUUUucAAGCuGCGCCGgggcugUCGCg -3'
miRNA:   3'- uCGUGCGGGcuUUUGuUGCGGC------AGCG- -5'
30201 3' -53.9 NC_006273.1 + 162211 0.66 0.990086
Target:  5'- cGGUGCGCUgcagccggaGGAAGCGGCGguagaaaCGUCGCa -3'
miRNA:   3'- -UCGUGCGGg--------CUUUUGUUGCg------GCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 84840 0.66 0.990086
Target:  5'- aGGCA--CCCGAGAcggccGCGGCGgCCGUCa- -3'
miRNA:   3'- -UCGUgcGGGCUUU-----UGUUGC-GGCAGcg -5'
30201 3' -53.9 NC_006273.1 + 116824 0.66 0.990086
Target:  5'- -uCGgGCUCGGAAACcACGCCGUUc- -3'
miRNA:   3'- ucGUgCGGGCUUUUGuUGCGGCAGcg -5'
30201 3' -53.9 NC_006273.1 + 169553 0.66 0.990086
Target:  5'- aGGCGCGUaCCGccuGCuGCGCCGccgaUUGCg -3'
miRNA:   3'- -UCGUGCG-GGCuuuUGuUGCGGC----AGCG- -5'
30201 3' -53.9 NC_006273.1 + 140089 0.66 0.990086
Target:  5'- uAGCGgGCCgGAGGACAAaaaGaaaaaCGUCGg -3'
miRNA:   3'- -UCGUgCGGgCUUUUGUUg--Cg----GCAGCg -5'
30201 3' -53.9 NC_006273.1 + 134428 0.66 0.990086
Target:  5'- --aGCGCCCGGcauAAACAuguugGCCGUCuuGCg -3'
miRNA:   3'- ucgUGCGGGCU---UUUGUug---CGGCAG--CG- -5'
30201 3' -53.9 NC_006273.1 + 67085 0.66 0.989961
Target:  5'- uGGCGCGCgaCGAGucgccgcgaccGACGuuuuuugACGCCGUCa- -3'
miRNA:   3'- -UCGUGCGg-GCUU-----------UUGU-------UGCGGCAGcg -5'
30201 3' -53.9 NC_006273.1 + 162566 0.66 0.988777
Target:  5'- cGCuACGacaCCGAcuACcugcuGCGCCGUCuGCg -3'
miRNA:   3'- uCG-UGCg--GGCUuuUGu----UGCGGCAG-CG- -5'
30201 3' -53.9 NC_006273.1 + 54249 0.66 0.988777
Target:  5'- -cCugGCCCGAAuGACGACGagacagagcCCGagGCg -3'
miRNA:   3'- ucGugCGGGCUU-UUGUUGC---------GGCagCG- -5'
30201 3' -53.9 NC_006273.1 + 136746 0.66 0.988777
Target:  5'- uGUACGCCaccgauccgcaCGAccGCGACGagGUCGCg -3'
miRNA:   3'- uCGUGCGG-----------GCUuuUGUUGCggCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 83344 0.66 0.988777
Target:  5'- uGGUggGaCCCG---GCGGCGCCGUgGUg -3'
miRNA:   3'- -UCGugC-GGGCuuuUGUUGCGGCAgCG- -5'
30201 3' -53.9 NC_006273.1 + 103881 0.66 0.988777
Target:  5'- uGCACGUCCagcGAGGAgu-UGCUGUUGCa -3'
miRNA:   3'- uCGUGCGGG---CUUUUguuGCGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.