miRNA display CGI


Results 1 - 20 of 497 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30201 3' -53.9 NC_006273.1 + 140149 0.66 0.984032
Target:  5'- cGGUggGUCuCGGGccaAACGCCGUCGUa -3'
miRNA:   3'- -UCGugCGG-GCUUuugUUGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 55598 0.66 0.985758
Target:  5'- cGCGCGCCaacauGAACucGCGacccaCGUCGCc -3'
miRNA:   3'- uCGUGCGGgcu--UUUGu-UGCg----GCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 43301 0.66 0.985592
Target:  5'- uGCugGCuuuucuccagaacCCGGAA---GCGUCGUCGCc -3'
miRNA:   3'- uCGugCG-------------GGCUUUuguUGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 150752 0.66 0.982153
Target:  5'- gAGCGCGCUgcaGAu--CAGcCGCCGggCGCu -3'
miRNA:   3'- -UCGUGCGGg--CUuuuGUU-GCGGCa-GCG- -5'
30201 3' -53.9 NC_006273.1 + 56348 0.66 0.985758
Target:  5'- uGGCACGUugccagCUGAAAc---CGCCGUCGUc -3'
miRNA:   3'- -UCGUGCG------GGCUUUuguuGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 169553 0.66 0.990086
Target:  5'- aGGCGCGUaCCGccuGCuGCGCCGccgaUUGCg -3'
miRNA:   3'- -UCGUGCG-GGCuuuUGuUGCGGC----AGCG- -5'
30201 3' -53.9 NC_006273.1 + 66371 0.66 0.982153
Target:  5'- aAGCAggaacucuuuCGCCUGG--GCAACGCCaaaaugcuagaGUUGCa -3'
miRNA:   3'- -UCGU----------GCGGGCUuuUGUUGCGG-----------CAGCG- -5'
30201 3' -53.9 NC_006273.1 + 58650 0.66 0.985758
Target:  5'- uAGCGCGUCCa-----AGCGCgCGUUGCc -3'
miRNA:   3'- -UCGUGCGGGcuuuugUUGCG-GCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 63252 0.66 0.982153
Target:  5'- uGCGCGCUCGuuaaucuGAACGAagGCCG-CGUc -3'
miRNA:   3'- uCGUGCGGGCu------UUUGUUg-CGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 65255 0.66 0.985592
Target:  5'- cGGCGuCGUCCGAGAaagcgcggacacgGCAGCGacaacgaccaCCGcCGCa -3'
miRNA:   3'- -UCGU-GCGGGCUUU-------------UGUUGC----------GGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 123804 0.66 0.985758
Target:  5'- uGCgACGUCgCGggGGCGGuuugagacuCGCCGuUCGCu -3'
miRNA:   3'- uCG-UGCGG-GCuuUUGUU---------GCGGC-AGCG- -5'
30201 3' -53.9 NC_006273.1 + 41507 0.66 0.984032
Target:  5'- aGGCGuCgGCgUGAGgauGGCAGCGCCGgCGCc -3'
miRNA:   3'- -UCGU-G-CGgGCUU---UUGUUGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 93955 0.66 0.982153
Target:  5'- aGGCGCGCCCugc-GCAuGCGCCGg--- -3'
miRNA:   3'- -UCGUGCGGGcuuuUGU-UGCGGCagcg -5'
30201 3' -53.9 NC_006273.1 + 135613 0.66 0.984032
Target:  5'- cGCACGCCgGccguu-ACGCCGaCGUg -3'
miRNA:   3'- uCGUGCGGgCuuuuguUGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 112249 0.66 0.985758
Target:  5'- gGGCugGCgCGAGGACgugcucAugGaCCGggugCGCa -3'
miRNA:   3'- -UCGugCGgGCUUUUG------UugC-GGCa---GCG- -5'
30201 3' -53.9 NC_006273.1 + 234472 0.66 0.981957
Target:  5'- cGGcCGCGaCCGAGgggcggggggcgcGGCGACauGCCGUUGCg -3'
miRNA:   3'- -UC-GUGCgGGCUU-------------UUGUUG--CGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 207823 0.66 0.982153
Target:  5'- uAGCGCGaaaacugucCCCaaccauGACAGCGCCGgUGCa -3'
miRNA:   3'- -UCGUGC---------GGGcuu---UUGUUGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 33259 0.66 0.982153
Target:  5'- cGGCGgGUCCGAGuuccAGCGGgGCC-UUGCg -3'
miRNA:   3'- -UCGUgCGGGCUU----UUGUUgCGGcAGCG- -5'
30201 3' -53.9 NC_006273.1 + 33314 0.66 0.982924
Target:  5'- cAGCucgGCGUCCGAGAGCGccgagcugaacugcgGCaGCCG-CGUg -3'
miRNA:   3'- -UCG---UGCGGGCUUUUGU---------------UG-CGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 99682 0.66 0.984032
Target:  5'- aGGgGCGCCgGggGACugggagggacCGCgGUCGUc -3'
miRNA:   3'- -UCgUGCGGgCuuUUGuu--------GCGgCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.