miRNA display CGI


Results 1 - 20 of 497 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30201 3' -53.9 NC_006273.1 + 194503 1.11 0.005784
Target:  5'- cAGCACGCCCGAAAACAACGCCGUCGCc -3'
miRNA:   3'- -UCGUGCGGGCUUUUGUUGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 234441 1.11 0.005784
Target:  5'- cAGCACGCCCGAAAACAACGCCGUCGCc -3'
miRNA:   3'- -UCGUGCGGGCUUUUGUUGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 109396 0.85 0.23173
Target:  5'- cAGCAUGUCCGAGcGCAAUGCCGcCGCc -3'
miRNA:   3'- -UCGUGCGGGCUUuUGUUGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 123027 0.82 0.32752
Target:  5'- uGGCGCGUCCGAAAAgaAGgGUCGUCGCa -3'
miRNA:   3'- -UCGUGCGGGCUUUUg-UUgCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 30754 0.82 0.342307
Target:  5'- cGC-UGCCCGAGAACGGCGCCGgcgGCg -3'
miRNA:   3'- uCGuGCGGGCUUUUGUUGCGGCag-CG- -5'
30201 3' -53.9 NC_006273.1 + 55339 0.81 0.365377
Target:  5'- uGCACG-CCGAAGACGGCGCCGcucUCGUu -3'
miRNA:   3'- uCGUGCgGGCUUUUGUUGCGGC---AGCG- -5'
30201 3' -53.9 NC_006273.1 + 38131 0.8 0.406149
Target:  5'- cGGCGCGCUCGGGccGGCGAgGCCGaCGCg -3'
miRNA:   3'- -UCGUGCGGGCUU--UUGUUgCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 142778 0.8 0.431944
Target:  5'- cGCGCGCCgcuggCGAGcaacAGCAGcCGCCGUCGCu -3'
miRNA:   3'- uCGUGCGG-----GCUU----UUGUU-GCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 200665 0.78 0.514603
Target:  5'- cGCACGCCCGAGGAUcuGGCGgCCGcCGg -3'
miRNA:   3'- uCGUGCGGGCUUUUG--UUGC-GGCaGCg -5'
30201 3' -53.9 NC_006273.1 + 142334 0.78 0.523239
Target:  5'- gAGCuGCGCgCGGAaagucagGACAGCGCCGUgGCa -3'
miRNA:   3'- -UCG-UGCGgGCUU-------UUGUUGCGGCAgCG- -5'
30201 3' -53.9 NC_006273.1 + 134956 0.78 0.524202
Target:  5'- cGCGCGCCCauaAAAACGAaaguguCGUCGUCGCg -3'
miRNA:   3'- uCGUGCGGGc--UUUUGUU------GCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 78515 0.78 0.524202
Target:  5'- cGGCGcCGCCCGGAcACcgGGCGCCGUCa- -3'
miRNA:   3'- -UCGU-GCGGGCUUuUG--UUGCGGCAGcg -5'
30201 3' -53.9 NC_006273.1 + 171634 0.78 0.533869
Target:  5'- aGGCGCGCCCGGccAC-GCGCCagccgaaacagaGUCGCg -3'
miRNA:   3'- -UCGUGCGGGCUuuUGuUGCGG------------CAGCG- -5'
30201 3' -53.9 NC_006273.1 + 129517 0.77 0.583033
Target:  5'- cAGCGCGaCCCGGAGA-AugGCCGgCGCu -3'
miRNA:   3'- -UCGUGC-GGGCUUUUgUugCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 77030 0.77 0.592992
Target:  5'- cGCACGCCgCGcGAACGACGCuCGgccuugCGCu -3'
miRNA:   3'- uCGUGCGG-GCuUUUGUUGCG-GCa-----GCG- -5'
30201 3' -53.9 NC_006273.1 + 118572 0.76 0.62
Target:  5'- uGGUuuccgaGCCCGAAAGCGacgucgcggccuccACGUCGUCGCa -3'
miRNA:   3'- -UCGug----CGGGCUUUUGU--------------UGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 135100 0.76 0.623007
Target:  5'- cGCGCGUggCCGucucGCuACGCCGUCGCg -3'
miRNA:   3'- uCGUGCG--GGCuuu-UGuUGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 194348 0.76 0.623007
Target:  5'- cAGUcagACGCCCGAGcaguCGACGCCGUC-Ca -3'
miRNA:   3'- -UCG---UGCGGGCUUuu--GUUGCGGCAGcG- -5'
30201 3' -53.9 NC_006273.1 + 36893 0.76 0.623007
Target:  5'- uGCGCGUCguaggCGAAcACGGCGCCGUaCGCg -3'
miRNA:   3'- uCGUGCGG-----GCUUuUGUUGCGGCA-GCG- -5'
30201 3' -53.9 NC_006273.1 + 156259 0.76 0.623007
Target:  5'- uGCAagagaagaaaCCCGGguggGAGCGACGCCGUCGCu -3'
miRNA:   3'- uCGUgc--------GGGCU----UUUGUUGCGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.