miRNA display CGI


Results 21 - 40 of 497 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30201 3' -53.9 NC_006273.1 + 175074 0.66 0.988777
Target:  5'- cAGUugGCGuCCCGAGucgccgucucccGACGgcACGCCGUCuGUg -3'
miRNA:   3'- -UCG--UGC-GGGCUU------------UUGU--UGCGGCAG-CG- -5'
30201 3' -53.9 NC_006273.1 + 64269 0.66 0.988777
Target:  5'- cGGCgGCGgCCGAAgcgGAUGGCGCCuuaCGCg -3'
miRNA:   3'- -UCG-UGCgGGCUU---UUGUUGCGGca-GCG- -5'
30201 3' -53.9 NC_006273.1 + 49334 0.66 0.988777
Target:  5'- uGC-CGCCCGcgcGGACGACGCUGa--- -3'
miRNA:   3'- uCGuGCGGGCu--UUUGUUGCGGCagcg -5'
30201 3' -53.9 NC_006273.1 + 43564 0.66 0.988777
Target:  5'- gAGUuu-CCCuGGAGCAGCGCCGUagGCa -3'
miRNA:   3'- -UCGugcGGGcUUUUGUUGCGGCAg-CG- -5'
30201 3' -53.9 NC_006273.1 + 103881 0.66 0.988777
Target:  5'- uGCACGUCCagcGAGGAgu-UGCUGUUGCa -3'
miRNA:   3'- uCGUGCGGG---CUUUUguuGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 200603 0.66 0.988777
Target:  5'- uGCGCGCCU----ACcuGACGCCGauUCGUa -3'
miRNA:   3'- uCGUGCGGGcuuuUG--UUGCGGC--AGCG- -5'
30201 3' -53.9 NC_006273.1 + 174457 0.66 0.988777
Target:  5'- aAGUuCGCCCGcGAGCGcUGuagcuuugucaaCCGUCGCa -3'
miRNA:   3'- -UCGuGCGGGCuUUUGUuGC------------GGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 21014 0.66 0.988777
Target:  5'- -uCACGCUCGcucugcuAAGCGACGCCGauUgGCu -3'
miRNA:   3'- ucGUGCGGGCu------UUUGUUGCGGC--AgCG- -5'
30201 3' -53.9 NC_006273.1 + 100364 0.66 0.988777
Target:  5'- gGGCggACGCUucugcaGAucGCAGaCGUCGUCGCg -3'
miRNA:   3'- -UCG--UGCGGg-----CUuuUGUU-GCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 122080 0.66 0.988777
Target:  5'- cAGCagACGUCgacuccagagaGAAAGC-ACGUCGUCGCg -3'
miRNA:   3'- -UCG--UGCGGg----------CUUUUGuUGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 162566 0.66 0.988777
Target:  5'- cGCuACGacaCCGAcuACcugcuGCGCCGUCuGCg -3'
miRNA:   3'- uCG-UGCg--GGCUuuUGu----UGCGGCAG-CG- -5'
30201 3' -53.9 NC_006273.1 + 101533 0.66 0.988777
Target:  5'- uGGCACggGUUCGuaauccAGACAgaaGCGCCGUgCGCg -3'
miRNA:   3'- -UCGUG--CGGGCu-----UUUGU---UGCGGCA-GCG- -5'
30201 3' -53.9 NC_006273.1 + 83344 0.66 0.988777
Target:  5'- uGGUggGaCCCG---GCGGCGCCGUgGUg -3'
miRNA:   3'- -UCGugC-GGGCuuuUGUUGCGGCAgCG- -5'
30201 3' -53.9 NC_006273.1 + 46611 0.66 0.987336
Target:  5'- cGCACGCCgaCGGAgccGACcACGCUGccuaUCGUg -3'
miRNA:   3'- uCGUGCGG--GCUU---UUGuUGCGGC----AGCG- -5'
30201 3' -53.9 NC_006273.1 + 62186 0.66 0.987336
Target:  5'- aGGCGCgGCCCu---ACGucaauugucGCGCCGUgGCc -3'
miRNA:   3'- -UCGUG-CGGGcuuuUGU---------UGCGGCAgCG- -5'
30201 3' -53.9 NC_006273.1 + 147824 0.66 0.987336
Target:  5'- cAGCAacaGcCCCGAAggUuAGCGCCG-CGg -3'
miRNA:   3'- -UCGUg--C-GGGCUUuuG-UUGCGGCaGCg -5'
30201 3' -53.9 NC_006273.1 + 207208 0.66 0.987336
Target:  5'- cGCugGUCUGGAacacGACggUGCCGUagagaCGUa -3'
miRNA:   3'- uCGugCGGGCUU----UUGuuGCGGCA-----GCG- -5'
30201 3' -53.9 NC_006273.1 + 197121 0.66 0.987336
Target:  5'- uGGCGgGUCCGGcggcgucggGGACcgUGCCG-CGCg -3'
miRNA:   3'- -UCGUgCGGGCU---------UUUGuuGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 47523 0.66 0.987336
Target:  5'- aAGUAagugGCCCGcGGGAgAACGCCGUaucuccCGCu -3'
miRNA:   3'- -UCGUg---CGGGC-UUUUgUUGCGGCA------GCG- -5'
30201 3' -53.9 NC_006273.1 + 61278 0.66 0.987336
Target:  5'- cGGCGCGCgCGGc--CGAgGCCGUguacaCGCu -3'
miRNA:   3'- -UCGUGCGgGCUuuuGUUgCGGCA-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.