miRNA display CGI


Results 1 - 20 of 497 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30201 3' -53.9 NC_006273.1 + 147 0.67 0.975518
Target:  5'- cGGCGCGCacggCGAAAAgcaGACGCgCGUCuGUg -3'
miRNA:   3'- -UCGUGCGg---GCUUUUg--UUGCG-GCAG-CG- -5'
30201 3' -53.9 NC_006273.1 + 425 0.69 0.940669
Target:  5'- uGCGCGCCgcaCGuc-GCuuuuauuCGCCGUCGCc -3'
miRNA:   3'- uCGUGCGG---GCuuuUGuu-----GCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 560 0.74 0.731967
Target:  5'- cAGCACacgGCCCGGAAugGAUGUCGggCGUc -3'
miRNA:   3'- -UCGUG---CGGGCUUUugUUGCGGCa-GCG- -5'
30201 3' -53.9 NC_006273.1 + 604 0.71 0.86952
Target:  5'- uGCGCGCUCGggGacccaguccGCGGCcCUGUUGCg -3'
miRNA:   3'- uCGUGCGGGCuuU---------UGUUGcGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 717 0.71 0.86952
Target:  5'- uGCACgGCCCcAAGGCGGCGCCagcaagCGCc -3'
miRNA:   3'- uCGUG-CGGGcUUUUGUUGCGGca----GCG- -5'
30201 3' -53.9 NC_006273.1 + 806 0.72 0.814138
Target:  5'- gAGC-CGUCCGcguguguAAACGGCGUgGUCGCu -3'
miRNA:   3'- -UCGuGCGGGCu------UUUGUUGCGgCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 1127 0.74 0.760415
Target:  5'- uGGCACgGCCCGGA----GCGCCuGUUGCu -3'
miRNA:   3'- -UCGUG-CGGGCUUuuguUGCGG-CAGCG- -5'
30201 3' -53.9 NC_006273.1 + 1498 0.67 0.975518
Target:  5'- cGCACGCagaUGGAGcuCGACGCCG-CGg -3'
miRNA:   3'- uCGUGCGg--GCUUUu-GUUGCGGCaGCg -5'
30201 3' -53.9 NC_006273.1 + 1651 0.69 0.949354
Target:  5'- gGGCAC-CCCGcgcGCGACGCUGcUGCc -3'
miRNA:   3'- -UCGUGcGGGCuuuUGUUGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 1704 0.72 0.814138
Target:  5'- uGCGCGCCgaGGAGGCGACGgCGcUCGg -3'
miRNA:   3'- uCGUGCGGg-CUUUUGUUGCgGC-AGCg -5'
30201 3' -53.9 NC_006273.1 + 1829 0.67 0.970191
Target:  5'- uGGCGCGCCaac--GCGACGgCC-UCGCu -3'
miRNA:   3'- -UCGUGCGGgcuuuUGUUGC-GGcAGCG- -5'
30201 3' -53.9 NC_006273.1 + 1968 0.67 0.970191
Target:  5'- cGGCGgGgCCGGcgacggGGACGACGUCG-CGCc -3'
miRNA:   3'- -UCGUgCgGGCU------UUUGUUGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 2024 0.75 0.702771
Target:  5'- aGGC-CGCCggCGggGAC-GCGCCGUgCGCg -3'
miRNA:   3'- -UCGuGCGG--GCuuUUGuUGCGGCA-GCG- -5'
30201 3' -53.9 NC_006273.1 + 2228 0.66 0.987336
Target:  5'- uGGCGgGUCCGGcggcgucggGGACcgUGCCG-CGCg -3'
miRNA:   3'- -UCGUgCGGGCU---------UUUGuuGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 2323 0.74 0.712572
Target:  5'- gGGCACGuguaCCCGcuGGCGGCggaGCUGUCGCa -3'
miRNA:   3'- -UCGUGC----GGGCuuUUGUUG---CGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 2401 0.68 0.953362
Target:  5'- gAGUcgGCGCCCGccgcCGAgGCCG-CGCg -3'
miRNA:   3'- -UCG--UGCGGGCuuuuGUUgCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 2498 0.68 0.95715
Target:  5'- cGCGCGCCgCGcuGugGGCGCgCGagcCGCa -3'
miRNA:   3'- uCGUGCGG-GCuuUugUUGCG-GCa--GCG- -5'
30201 3' -53.9 NC_006273.1 + 5722 0.74 0.722307
Target:  5'- uGGCGCuucGCCCGAGGAaGACGCCGacgacUCGUc -3'
miRNA:   3'- -UCGUG---CGGGCUUUUgUUGCGGC-----AGCG- -5'
30201 3' -53.9 NC_006273.1 + 7673 0.69 0.935987
Target:  5'- -cUugGCCUucaGAGACcGCGCCGUCGUu -3'
miRNA:   3'- ucGugCGGGc--UUUUGuUGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 7750 0.74 0.719394
Target:  5'- cGGgGCGUCCGAAGGCGAggauggcauggucuCGCCGgagCGCc -3'
miRNA:   3'- -UCgUGCGGGCUUUUGUU--------------GCGGCa--GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.