miRNA display CGI


Results 1 - 20 of 497 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30201 3' -53.9 NC_006273.1 + 234102 0.75 0.702771
Target:  5'- cGGC-CGUCCGAGcggcAGCAGCGUgcccgCGUCGCg -3'
miRNA:   3'- -UCGuGCGGGCUU----UUGUUGCG-----GCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 156259 0.76 0.623007
Target:  5'- uGCAagagaagaaaCCCGGguggGAGCGACGCCGUCGCu -3'
miRNA:   3'- uCGUgc--------GGGCU----UUUGUUGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 120871 0.76 0.633034
Target:  5'- --aACGCCCGccguGC-ACGCCGUCGCc -3'
miRNA:   3'- ucgUGCGGGCuuu-UGuUGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 152863 0.76 0.643061
Target:  5'- cAGCGCGCgguagGGAAACAACGCCG-CGUg -3'
miRNA:   3'- -UCGUGCGgg---CUUUUGUUGCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 65683 0.75 0.663082
Target:  5'- uGCACGCggcggguaCCGAAAGCGGCGCUaaCGCg -3'
miRNA:   3'- uCGUGCG--------GGCUUUUGUUGCGGcaGCG- -5'
30201 3' -53.9 NC_006273.1 + 35100 0.75 0.663082
Target:  5'- cAGCACGCuacgacCCGAAAACAcguacucgcugACGUCGUaCGCg -3'
miRNA:   3'- -UCGUGCG------GGCUUUUGU-----------UGCGGCA-GCG- -5'
30201 3' -53.9 NC_006273.1 + 213475 0.75 0.673061
Target:  5'- uAGCaucaGCGUcaCCGucAACAGCGUCGUCGCg -3'
miRNA:   3'- -UCG----UGCG--GGCuuUUGUUGCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 31399 0.75 0.683007
Target:  5'- cGGCACGCCCGAAu----CGCCG-CGg -3'
miRNA:   3'- -UCGUGCGGGCUUuuguuGCGGCaGCg -5'
30201 3' -53.9 NC_006273.1 + 122769 0.75 0.702771
Target:  5'- gAGCGCGuCCCGuggGAACGugGCgccguucuCGUCGCu -3'
miRNA:   3'- -UCGUGC-GGGCu--UUUGUugCG--------GCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 36893 0.76 0.623007
Target:  5'- uGCGCGUCguaggCGAAcACGGCGCCGUaCGCg -3'
miRNA:   3'- uCGUGCGG-----GCUUuUGUUGCGGCA-GCG- -5'
30201 3' -53.9 NC_006273.1 + 77030 0.77 0.592992
Target:  5'- cGCACGCCgCGcGAACGACGCuCGgccuugCGCu -3'
miRNA:   3'- uCGUGCGG-GCuUUUGUUGCG-GCa-----GCG- -5'
30201 3' -53.9 NC_006273.1 + 129517 0.77 0.583033
Target:  5'- cAGCGCGaCCCGGAGA-AugGCCGgCGCu -3'
miRNA:   3'- -UCGUGC-GGGCUUUUgUugCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 123027 0.82 0.32752
Target:  5'- uGGCGCGUCCGAAAAgaAGgGUCGUCGCa -3'
miRNA:   3'- -UCGUGCGGGCUUUUg-UUgCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 30754 0.82 0.342307
Target:  5'- cGC-UGCCCGAGAACGGCGCCGgcgGCg -3'
miRNA:   3'- uCGuGCGGGCUUUUGUUGCGGCag-CG- -5'
30201 3' -53.9 NC_006273.1 + 55339 0.81 0.365377
Target:  5'- uGCACG-CCGAAGACGGCGCCGcucUCGUu -3'
miRNA:   3'- uCGUGCgGGCUUUUGUUGCGGC---AGCG- -5'
30201 3' -53.9 NC_006273.1 + 38131 0.8 0.406149
Target:  5'- cGGCGCGCUCGGGccGGCGAgGCCGaCGCg -3'
miRNA:   3'- -UCGUGCGGGCUU--UUGUUgCGGCaGCG- -5'
30201 3' -53.9 NC_006273.1 + 142778 0.8 0.431944
Target:  5'- cGCGCGCCgcuggCGAGcaacAGCAGcCGCCGUCGCu -3'
miRNA:   3'- uCGUGCGG-----GCUU----UUGUU-GCGGCAGCG- -5'
30201 3' -53.9 NC_006273.1 + 142334 0.78 0.523239
Target:  5'- gAGCuGCGCgCGGAaagucagGACAGCGCCGUgGCa -3'
miRNA:   3'- -UCG-UGCGgGCUU-------UUGUUGCGGCAgCG- -5'
30201 3' -53.9 NC_006273.1 + 78515 0.78 0.524202
Target:  5'- cGGCGcCGCCCGGAcACcgGGCGCCGUCa- -3'
miRNA:   3'- -UCGU-GCGGGCUUuUG--UUGCGGCAGcg -5'
30201 3' -53.9 NC_006273.1 + 134956 0.78 0.524202
Target:  5'- cGCGCGCCCauaAAAACGAaaguguCGUCGUCGCg -3'
miRNA:   3'- uCGUGCGGGc--UUUUGUU------GCGGCAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.