miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30201 5' -54.4 NC_006273.1 + 143238 0.66 0.969438
Target:  5'- cGGCGGAGCGCaGCGaAAAucgguggugauAGCgGCGa -3'
miRNA:   3'- uUCGCUUCGCGaCGCgUUU-----------UCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 231165 0.66 0.969438
Target:  5'- --uUGggGCGgUGgGUccGAGCUGCGg -3'
miRNA:   3'- uucGCuuCGCgACgCGuuUUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 148367 0.66 0.969438
Target:  5'- -cGCGAGGUGUguuuuuUGCGCAccuGuCUGCGu -3'
miRNA:   3'- uuCGCUUCGCG------ACGCGUuuuC-GACGC- -5'
30201 5' -54.4 NC_006273.1 + 21558 0.66 0.969438
Target:  5'- cGGCG--GCGCgGCGCAGcGGCUGa- -3'
miRNA:   3'- uUCGCuuCGCGaCGCGUUuUCGACgc -5'
30201 5' -54.4 NC_006273.1 + 103934 0.66 0.969438
Target:  5'- aAAGCGGAcacGCGCUGaCGgAAGGGCgaGCc -3'
miRNA:   3'- -UUCGCUU---CGCGAC-GCgUUUUCGa-CGc -5'
30201 5' -54.4 NC_006273.1 + 146462 0.66 0.969438
Target:  5'- uGGUGAcugAGCGCaGCGacuucuucgcCGGAGGCUGUGg -3'
miRNA:   3'- uUCGCU---UCGCGaCGC----------GUUUUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 154548 0.66 0.969438
Target:  5'- cAAG-GAGGCGCUGCGCccc-GCgGCc -3'
miRNA:   3'- -UUCgCUUCGCGACGCGuuuuCGaCGc -5'
30201 5' -54.4 NC_006273.1 + 214071 0.66 0.966344
Target:  5'- -cGCGGuuGCGgUcGCGCAccGGCUGCa -3'
miRNA:   3'- uuCGCUu-CGCgA-CGCGUuuUCGACGc -5'
30201 5' -54.4 NC_006273.1 + 144543 0.66 0.966344
Target:  5'- -cGCGcAGCGCUuuuguggagGCGCGAGGGCUcuacGUGc -3'
miRNA:   3'- uuCGCuUCGCGA---------CGCGUUUUCGA----CGC- -5'
30201 5' -54.4 NC_006273.1 + 61273 0.66 0.966344
Target:  5'- cAGCGcGGCGC-GCGCGgccGAGGCcGUGu -3'
miRNA:   3'- uUCGCuUCGCGaCGCGU---UUUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 121405 0.66 0.966023
Target:  5'- aAAGcCGuuGCGCUcguggggGCGCAugaAGGGUUGCGg -3'
miRNA:   3'- -UUC-GCuuCGCGA-------CGCGU---UUUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 167183 0.66 0.963035
Target:  5'- cGGCG-GGCGCagcgGcCGCGGAGGCcgGCGu -3'
miRNA:   3'- uUCGCuUCGCGa---C-GCGUUUUCGa-CGC- -5'
30201 5' -54.4 NC_006273.1 + 104606 0.66 0.963035
Target:  5'- uGGCccAGCGcCUGUGCG--AGCUGCu -3'
miRNA:   3'- uUCGcuUCGC-GACGCGUuuUCGACGc -5'
30201 5' -54.4 NC_006273.1 + 34642 0.66 0.963035
Target:  5'- cAGCGAAGCaCUGCuGCAGccagaccgGAGCgGUGa -3'
miRNA:   3'- uUCGCUUCGcGACG-CGUU--------UUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 98174 0.66 0.963035
Target:  5'- uGGGCGccGAGCGCUcGCGCuggcgacGAGCUcGCu -3'
miRNA:   3'- -UUCGC--UUCGCGA-CGCGuu-----UUCGA-CGc -5'
30201 5' -54.4 NC_006273.1 + 204880 0.66 0.961999
Target:  5'- -uGCGAuccagaucuuccguGGCGCUGCGCGcccGCgUGCu -3'
miRNA:   3'- uuCGCU--------------UCGCGACGCGUuuuCG-ACGc -5'
30201 5' -54.4 NC_006273.1 + 179432 0.66 0.959505
Target:  5'- cAGCGGcacGGUGCUGCGUcucAGCUGg- -3'
miRNA:   3'- uUCGCU---UCGCGACGCGuuuUCGACgc -5'
30201 5' -54.4 NC_006273.1 + 80041 0.66 0.959505
Target:  5'- uGGCGAAGCGaccgccCGUGAGAcGCUGCa -3'
miRNA:   3'- uUCGCUUCGCgac---GCGUUUU-CGACGc -5'
30201 5' -54.4 NC_006273.1 + 110518 0.66 0.959505
Target:  5'- aGGGCGAcGCGCUaUGCGu--GCUGCc -3'
miRNA:   3'- -UUCGCUuCGCGAcGCGUuuuCGACGc -5'
30201 5' -54.4 NC_006273.1 + 108053 0.66 0.955751
Target:  5'- -cGUGAAcGCGCUGCaCGAccaccGGCUGUGg -3'
miRNA:   3'- uuCGCUU-CGCGACGcGUUu----UCGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.