Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30201 | 5' | -54.4 | NC_006273.1 | + | 194538 | 1.06 | 0.007273 |
Target: 5'- aAAGCGAAGCGCUGCGCAAAAGCUGCGu -3' miRNA: 3'- -UUCGCUUCGCGACGCGUUUUCGACGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 234476 | 1.06 | 0.007273 |
Target: 5'- aAAGCGAAGCGCUGCGCAAAAGCUGCGu -3' miRNA: 3'- -UUCGCUUCGCGACGCGUUUUCGACGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 217630 | 0.77 | 0.457384 |
Target: 5'- cAGCGAGucggauaaagcGCGCUGCGCGAAAGCUuaauauaggagcaGCGu -3' miRNA: 3'- uUCGCUU-----------CGCGACGCGUUUUCGA-------------CGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 104682 | 0.77 | 0.486691 |
Target: 5'- uAGCGAGGacguggaGCUGCGCG--AGCUGCa -3' miRNA: 3'- uUCGCUUCg------CGACGCGUuuUCGACGc -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 82420 | 0.75 | 0.545734 |
Target: 5'- -cGCGAcccgugcGUGCUGCGCAAGcAGCUGCu -3' miRNA: 3'- uuCGCUu------CGCGACGCGUUU-UCGACGc -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 201727 | 0.75 | 0.596606 |
Target: 5'- aAGGCGAGGCugcgcuGCUGCGCAAGGGaCUcGCu -3' miRNA: 3'- -UUCGCUUCG------CGACGCGUUUUC-GA-CGc -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 202685 | 0.74 | 0.606887 |
Target: 5'- -cGUGGAgcGCGCUGCGCAGGgcAGaCUGCGu -3' miRNA: 3'- uuCGCUU--CGCGACGCGUUU--UC-GACGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 126506 | 0.74 | 0.631626 |
Target: 5'- aGGGCGAGcGCaGCcaguugugguacucgUGCGCGAAGGCUGUGg -3' miRNA: 3'- -UUCGCUU-CG-CG---------------ACGCGUUUUCGACGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 49910 | 0.73 | 0.668702 |
Target: 5'- aGGGCcccaGGGCGCUGCGCGAacgGAGCUGg- -3' miRNA: 3'- -UUCGc---UUCGCGACGCGUU---UUCGACgc -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 94879 | 0.73 | 0.689157 |
Target: 5'- cAGGUGucaCGC-GCGCAAAAGCUGCGc -3' miRNA: 3'- -UUCGCuucGCGaCGCGUUUUCGACGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 78784 | 0.72 | 0.709418 |
Target: 5'- cGAGUGAgaGGCGCgacagGCGCAc-GGCUGCu -3' miRNA: 3'- -UUCGCU--UCGCGa----CGCGUuuUCGACGc -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 81731 | 0.72 | 0.739288 |
Target: 5'- uGGCGGccgcuugcccgAGCcCUGCGCGGAgccgGGCUGCGa -3' miRNA: 3'- uUCGCU-----------UCGcGACGCGUUU----UCGACGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 17855 | 0.72 | 0.739288 |
Target: 5'- -cGCGAcgAGCGCUGCG-AAGAugcuauccGCUGCGa -3' miRNA: 3'- uuCGCU--UCGCGACGCgUUUU--------CGACGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 196607 | 0.72 | 0.749067 |
Target: 5'- gAGGCGAcGGCGCU-CGgaCGGGAGCUGCGc -3' miRNA: 3'- -UUCGCU-UCGCGAcGC--GUUUUCGACGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 137216 | 0.72 | 0.749067 |
Target: 5'- cAGCGcGAGCGCUcgGCGCccaaaccgcAGGAGCUGCu -3' miRNA: 3'- uUCGC-UUCGCGA--CGCG---------UUUUCGACGc -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 1715 | 0.72 | 0.749067 |
Target: 5'- gAGGCGAcGGCGCU-CGgaCGGGAGCUGCGc -3' miRNA: 3'- -UUCGCU-UCGCGAcGC--GUUUUCGACGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 45977 | 0.72 | 0.758742 |
Target: 5'- uAAGCGuGGUGcCUGCGCGu--GCUGCu -3' miRNA: 3'- -UUCGCuUCGC-GACGCGUuuuCGACGc -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 144454 | 0.71 | 0.768303 |
Target: 5'- cGGCGAGGCGgUGCGCGugccGUUGUa -3' miRNA: 3'- uUCGCUUCGCgACGCGUuuu-CGACGc -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 158223 | 0.71 | 0.768303 |
Target: 5'- -cGUGAGGCGCgggcGCGCGucGGCcgGCGa -3' miRNA: 3'- uuCGCUUCGCGa---CGCGUuuUCGa-CGC- -5' |
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30201 | 5' | -54.4 | NC_006273.1 | + | 141746 | 0.71 | 0.776803 |
Target: 5'- aGGGCGcgccGGCGCcaguggaUGCGCGAA-GCUGCGc -3' miRNA: 3'- -UUCGCu---UCGCG-------ACGCGUUUuCGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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