miRNA display CGI


Results 21 - 40 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30201 5' -54.4 NC_006273.1 + 36722 0.66 0.955751
Target:  5'- cGAGCGGAG-GC-GCGCG--AGCgGCGg -3'
miRNA:   3'- -UUCGCUUCgCGaCGCGUuuUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 176277 0.66 0.955751
Target:  5'- --aUGAAGCGCuaccgUGCGCGuGAGCaGCGc -3'
miRNA:   3'- uucGCUUCGCG-----ACGCGUuUUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 108053 0.66 0.955751
Target:  5'- -cGUGAAcGCGCUGCaCGAccaccGGCUGUGg -3'
miRNA:   3'- uuCGCUU-CGCGACGcGUUu----UCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 2369 0.67 0.951766
Target:  5'- cGGGCGugcuGGGCGCgcugGCGCuGGGGC-GCGa -3'
miRNA:   3'- -UUCGC----UUCGCGa---CGCGuUUUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 186622 0.67 0.951766
Target:  5'- ---gGAGGUGUUcGC-CAGAAGCUGCGa -3'
miRNA:   3'- uucgCUUCGCGA-CGcGUUUUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 153861 0.67 0.951766
Target:  5'- cGAGUGcGGCcuuauGCUGCGCuacauGCUGCa -3'
miRNA:   3'- -UUCGCuUCG-----CGACGCGuuuu-CGACGc -5'
30201 5' -54.4 NC_006273.1 + 197262 0.67 0.951766
Target:  5'- cGGGCGugcuGGGCGCgcugGCGCuGGGGC-GCGa -3'
miRNA:   3'- -UUCGC----UUCGCGa---CGCGuUUUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 16892 0.67 0.951766
Target:  5'- -uGCGgcGCGCgGCcaggcuggaacGCAacgGAGGCUGCGu -3'
miRNA:   3'- uuCGCuuCGCGaCG-----------CGU---UUUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 38007 0.67 0.947548
Target:  5'- cAGCGcGGCGCgcggGUGCAGGuGCaGCGc -3'
miRNA:   3'- uUCGCuUCGCGa---CGCGUUUuCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 232900 0.67 0.947548
Target:  5'- cAGCGcGGCGCgcggGUGCAGGuGCaGCGc -3'
miRNA:   3'- uUCGCuUCGCGa---CGCGUUUuCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 31655 0.67 0.947548
Target:  5'- -cGCGugcuGCGCUGCuaucuccaGCAccAGCUGCa -3'
miRNA:   3'- uuCGCuu--CGCGACG--------CGUuuUCGACGc -5'
30201 5' -54.4 NC_006273.1 + 177056 0.67 0.947548
Target:  5'- -uGgGAAGCGCUGCGCGccgacauGCU-CGa -3'
miRNA:   3'- uuCgCUUCGCGACGCGUuuu----CGAcGC- -5'
30201 5' -54.4 NC_006273.1 + 93580 0.67 0.944904
Target:  5'- uGAGCGGcGGCGgcCUGCGCGGccuguaccgcggcuuGAGCgGCGg -3'
miRNA:   3'- -UUCGCU-UCGC--GACGCGUU---------------UUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 35008 0.67 0.943093
Target:  5'- -cGCGGAGCGacgGCGguAAAGCcagacaGCGg -3'
miRNA:   3'- uuCGCUUCGCga-CGCguUUUCGa-----CGC- -5'
30201 5' -54.4 NC_006273.1 + 27032 0.67 0.941245
Target:  5'- -cGCGgcGCGUagaaagccaagcgGCGCAAGGGCcgGCGa -3'
miRNA:   3'- uuCGCuuCGCGa------------CGCGUUUUCGa-CGC- -5'
30201 5' -54.4 NC_006273.1 + 147248 0.67 0.938399
Target:  5'- -uGCGAGGCGCUGgcCGCGuc-GCUGaUGg -3'
miRNA:   3'- uuCGCUUCGCGAC--GCGUuuuCGAC-GC- -5'
30201 5' -54.4 NC_006273.1 + 84029 0.67 0.938399
Target:  5'- -cGCGAgaaGGCGCgccgGCGCcaaauGAGCcGCGa -3'
miRNA:   3'- uuCGCU---UCGCGa---CGCGuu---UUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 132120 0.67 0.933464
Target:  5'- uAGuCGAGGUGCUGgGCGu--GUUGCa -3'
miRNA:   3'- uUC-GCUUCGCGACgCGUuuuCGACGc -5'
30201 5' -54.4 NC_006273.1 + 192795 0.67 0.933464
Target:  5'- gGAGCGuuGCaaGCUGCuggucaAGGAGCUGCGc -3'
miRNA:   3'- -UUCGCuuCG--CGACGcg----UUUUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 233717 0.67 0.931422
Target:  5'- uAGCcGAGCGCUGCGCccucgccuauGUUGUGa -3'
miRNA:   3'- uUCGcUUCGCGACGCGuuuu------CGACGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.