miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30201 5' -54.4 NC_006273.1 + 1164 0.71 0.796211
Target:  5'- cGGUGGAGCGCcagGCGCugacGGAGCUGg- -3'
miRNA:   3'- uUCGCUUCGCGa--CGCGu---UUUCGACgc -5'
30201 5' -54.4 NC_006273.1 + 1608 0.68 0.928286
Target:  5'- cGGGCGAGGUGgUGCGgCuguAccGCUGCa -3'
miRNA:   3'- -UUCGCUUCGCgACGC-Gu--UuuCGACGc -5'
30201 5' -54.4 NC_006273.1 + 1715 0.72 0.749067
Target:  5'- gAGGCGAcGGCGCU-CGgaCGGGAGCUGCGc -3'
miRNA:   3'- -UUCGCU-UCGCGAcGC--GUUUUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 1786 0.7 0.839601
Target:  5'- aAGGCGAcugcagccgauGGUGCUGCugggcgcgugGCAGGAGCUGgCGc -3'
miRNA:   3'- -UUCGCU-----------UCGCGACG----------CGUUUUCGAC-GC- -5'
30201 5' -54.4 NC_006273.1 + 1932 0.68 0.917202
Target:  5'- uGGGCGcGGUGCUgcccGCGCGGuGGCUGgGu -3'
miRNA:   3'- -UUCGCuUCGCGA----CGCGUUuUCGACgC- -5'
30201 5' -54.4 NC_006273.1 + 2369 0.67 0.951766
Target:  5'- cGGGCGugcuGGGCGCgcugGCGCuGGGGC-GCGa -3'
miRNA:   3'- -UUCGC----UUCGCGa---CGCGuUUUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 15666 0.68 0.928286
Target:  5'- cAGCuGggGCGUUGCGau---GCUGCu -3'
miRNA:   3'- uUCG-CuuCGCGACGCguuuuCGACGc -5'
30201 5' -54.4 NC_006273.1 + 16892 0.67 0.951766
Target:  5'- -uGCGgcGCGCgGCcaggcuggaacGCAacgGAGGCUGCGu -3'
miRNA:   3'- uuCGCuuCGCGaCG-----------CGU---UUUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 17855 0.72 0.739288
Target:  5'- -cGCGAcgAGCGCUGCG-AAGAugcuauccGCUGCGa -3'
miRNA:   3'- uuCGCU--UCGCGACGCgUUUU--------CGACGC- -5'
30201 5' -54.4 NC_006273.1 + 21558 0.66 0.969438
Target:  5'- cGGCG--GCGCgGCGCAGcGGCUGa- -3'
miRNA:   3'- uUCGCuuCGCGaCGCGUUuUCGACgc -5'
30201 5' -54.4 NC_006273.1 + 27032 0.67 0.941245
Target:  5'- -cGCGgcGCGUagaaagccaagcgGCGCAAGGGCcgGCGa -3'
miRNA:   3'- uuCGCuuCGCGa------------CGCGUUUUCGa-CGC- -5'
30201 5' -54.4 NC_006273.1 + 28596 0.7 0.822764
Target:  5'- uAAGCGAGGCGgUGUGCGGcAGCUc-- -3'
miRNA:   3'- -UUCGCUUCGCgACGCGUUuUCGAcgc -5'
30201 5' -54.4 NC_006273.1 + 28709 0.68 0.911297
Target:  5'- cGGCGAccUGCUGCGCAccgcuauGCUGCu -3'
miRNA:   3'- uUCGCUucGCGACGCGUuuu----CGACGc -5'
30201 5' -54.4 NC_006273.1 + 31450 0.69 0.895488
Target:  5'- uGGCGAAGCcgccaugaggcggugGCUGCGCcuccucgucggccuGGGCUGCu -3'
miRNA:   3'- uUCGCUUCG---------------CGACGCGuu------------UUCGACGc -5'
30201 5' -54.4 NC_006273.1 + 31655 0.67 0.947548
Target:  5'- -cGCGugcuGCGCUGCuaucuccaGCAccAGCUGCa -3'
miRNA:   3'- uuCGCuu--CGCGACG--------CGUuuUCGACGc -5'
30201 5' -54.4 NC_006273.1 + 34499 0.69 0.863401
Target:  5'- aAAGCGccGGCGUUGagccaGCGAAAauGCUGCGg -3'
miRNA:   3'- -UUCGCu-UCGCGACg----CGUUUU--CGACGC- -5'
30201 5' -54.4 NC_006273.1 + 34642 0.66 0.963035
Target:  5'- cAGCGAAGCaCUGCuGCAGccagaccgGAGCgGUGa -3'
miRNA:   3'- uUCGCUUCGcGACG-CGUU--------UUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 35008 0.67 0.943093
Target:  5'- -cGCGGAGCGacgGCGguAAAGCcagacaGCGg -3'
miRNA:   3'- uuCGCUUCGCga-CGCguUUUCGa-----CGC- -5'
30201 5' -54.4 NC_006273.1 + 36722 0.66 0.955751
Target:  5'- cGAGCGGAG-GC-GCGCG--AGCgGCGg -3'
miRNA:   3'- -UUCGCUUCgCGaCGCGUuuUCGaCGC- -5'
30201 5' -54.4 NC_006273.1 + 38007 0.67 0.947548
Target:  5'- cAGCGcGGCGCgcggGUGCAGGuGCaGCGc -3'
miRNA:   3'- uUCGCuUCGCGa---CGCGUUUuCGaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.