miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30201 5' -54.4 NC_006273.1 + 104346 0.7 0.847735
Target:  5'- uGGGCuGgcGCGCggccagguaGCGCGAGAGUUGCa -3'
miRNA:   3'- -UUCG-CuuCGCGa--------CGCGUUUUCGACGc -5'
30201 5' -54.4 NC_006273.1 + 45584 0.71 0.805224
Target:  5'- cGGCGAaaaaucGGCGCUGgGCGuAGAGgUGCa -3'
miRNA:   3'- uUCGCU------UCGCGACgCGU-UUUCgACGc -5'
30201 5' -54.4 NC_006273.1 + 104020 0.7 0.814078
Target:  5'- cAG-GucGCGC-GUGCAGAAGCUGCGc -3'
miRNA:   3'- uUCgCuuCGCGaCGCGUUUUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 28596 0.7 0.822764
Target:  5'- uAAGCGAGGCGgUGUGCGGcAGCUc-- -3'
miRNA:   3'- -UUCGCUUCGCgACGCGUUuUCGAcgc -5'
30201 5' -54.4 NC_006273.1 + 133475 0.7 0.822764
Target:  5'- cGGCGgcGUGCagGCGCGGAcGCUGgCGg -3'
miRNA:   3'- uUCGCuuCGCGa-CGCGUUUuCGAC-GC- -5'
30201 5' -54.4 NC_006273.1 + 151824 0.7 0.839601
Target:  5'- -cGCGAGGCGUaGCGCGuGAGCaggucGCGc -3'
miRNA:   3'- uuCGCUUCGCGaCGCGUuUUCGa----CGC- -5'
30201 5' -54.4 NC_006273.1 + 194861 0.7 0.839601
Target:  5'- cGGCGGAGCGCUugcgGCGCcauAAAGGC-GCu -3'
miRNA:   3'- uUCGCUUCGCGA----CGCG---UUUUCGaCGc -5'
30201 5' -54.4 NC_006273.1 + 196678 0.7 0.839601
Target:  5'- aAGGCGAcugcagccgauGGUGCUGCugggcgcgugGCAGGAGCUGgCGc -3'
miRNA:   3'- -UUCGCU-----------UCGCGACG----------CGUUUUCGAC-GC- -5'
30201 5' -54.4 NC_006273.1 + 68533 0.7 0.847735
Target:  5'- cGGCGGAGCGCacggUGCGCuGGAuGCUGg- -3'
miRNA:   3'- uUCGCUUCGCG----ACGCGuUUU-CGACgc -5'
30201 5' -54.4 NC_006273.1 + 196057 0.71 0.796211
Target:  5'- cGGUGGAGCGCcagGCGCugacGGAGCUGg- -3'
miRNA:   3'- uUCGCUUCGCGa--CGCGu---UUUCGACgc -5'
30201 5' -54.4 NC_006273.1 + 149506 0.71 0.787047
Target:  5'- -uGCGGuGGCGCuuguUGCGCG--GGCUGCGu -3'
miRNA:   3'- uuCGCU-UCGCG----ACGCGUuuUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 141746 0.71 0.776803
Target:  5'- aGGGCGcgccGGCGCcaguggaUGCGCGAA-GCUGCGc -3'
miRNA:   3'- -UUCGCu---UCGCG-------ACGCGUUUuCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 217630 0.77 0.457384
Target:  5'- cAGCGAGucggauaaagcGCGCUGCGCGAAAGCUuaauauaggagcaGCGu -3'
miRNA:   3'- uUCGCUU-----------CGCGACGCGUUUUCGA-------------CGC- -5'
30201 5' -54.4 NC_006273.1 + 104682 0.77 0.486691
Target:  5'- uAGCGAGGacguggaGCUGCGCG--AGCUGCa -3'
miRNA:   3'- uUCGCUUCg------CGACGCGUuuUCGACGc -5'
30201 5' -54.4 NC_006273.1 + 126506 0.74 0.631626
Target:  5'- aGGGCGAGcGCaGCcaguugugguacucgUGCGCGAAGGCUGUGg -3'
miRNA:   3'- -UUCGCUU-CG-CG---------------ACGCGUUUUCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 49910 0.73 0.668702
Target:  5'- aGGGCcccaGGGCGCUGCGCGAacgGAGCUGg- -3'
miRNA:   3'- -UUCGc---UUCGCGACGCGUU---UUCGACgc -5'
30201 5' -54.4 NC_006273.1 + 78784 0.72 0.709418
Target:  5'- cGAGUGAgaGGCGCgacagGCGCAc-GGCUGCu -3'
miRNA:   3'- -UUCGCU--UCGCGa----CGCGUuuUCGACGc -5'
30201 5' -54.4 NC_006273.1 + 81731 0.72 0.739288
Target:  5'- uGGCGGccgcuugcccgAGCcCUGCGCGGAgccgGGCUGCGa -3'
miRNA:   3'- uUCGCU-----------UCGcGACGCGUUU----UCGACGC- -5'
30201 5' -54.4 NC_006273.1 + 137216 0.72 0.749067
Target:  5'- cAGCGcGAGCGCUcgGCGCccaaaccgcAGGAGCUGCu -3'
miRNA:   3'- uUCGC-UUCGCGA--CGCG---------UUUUCGACGc -5'
30201 5' -54.4 NC_006273.1 + 196607 0.72 0.749067
Target:  5'- gAGGCGAcGGCGCU-CGgaCGGGAGCUGCGc -3'
miRNA:   3'- -UUCGCU-UCGCGAcGC--GUUUUCGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.