miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 222432 0.66 0.761354
Target:  5'- aGAG-GCCCGUAcACGCUCCacgGUCCCa- -3'
miRNA:   3'- gCUCgCGGGCGU-UGUGGGG---CAGGGgc -5'
30202 3' -63 NC_006273.1 + 213292 0.66 0.752567
Target:  5'- aCGAGUGUggucaaaccgUgGCGGCACCCUGUauccgaCCCGu -3'
miRNA:   3'- -GCUCGCG----------GgCGUUGUGGGGCAg-----GGGC- -5'
30202 3' -63 NC_006273.1 + 130421 0.66 0.752567
Target:  5'- gCGAccGCGCCCGCGucaugaugGCGCUUCGcuUgCCCGa -3'
miRNA:   3'- -GCU--CGCGGGCGU--------UGUGGGGC--AgGGGC- -5'
30202 3' -63 NC_006273.1 + 20332 0.66 0.752567
Target:  5'- gCGGGCGUCUGaGACAUCCCGcgggaagcggUCCCa- -3'
miRNA:   3'- -GCUCGCGGGCgUUGUGGGGC----------AGGGgc -5'
30202 3' -63 NC_006273.1 + 85112 0.66 0.752567
Target:  5'- aCGAGCuCCCGCAcguGCAUCCaCaUCUCCu -3'
miRNA:   3'- -GCUCGcGGGCGU---UGUGGG-GcAGGGGc -5'
30202 3' -63 NC_006273.1 + 134172 0.66 0.752567
Target:  5'- gCGAcGCGUggCCGCGucCGCCUCGgugCCCCu -3'
miRNA:   3'- -GCU-CGCG--GGCGUu-GUGGGGCa--GGGGc -5'
30202 3' -63 NC_006273.1 + 21408 0.66 0.752567
Target:  5'- aGAG-GCUgGCGguauggcugcGCGCCuCCGUCCUCGu -3'
miRNA:   3'- gCUCgCGGgCGU----------UGUGG-GGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 138037 0.66 0.751683
Target:  5'- -cGGCGCCgGCGccugguuGCugCCgCGUCCCg- -3'
miRNA:   3'- gcUCGCGGgCGU-------UGugGG-GCAGGGgc -5'
30202 3' -63 NC_006273.1 + 194496 0.66 0.74369
Target:  5'- -cGGCGCCCaGCAcgcccgaaaacaACGCCgucgCCG-CCCCGa -3'
miRNA:   3'- gcUCGCGGG-CGU------------UGUGG----GGCaGGGGC- -5'
30202 3' -63 NC_006273.1 + 38075 0.66 0.74369
Target:  5'- uCGAGCGUCa-CGGCACgCCGUCuugaacgcagggCCCGg -3'
miRNA:   3'- -GCUCGCGGgcGUUGUGgGGCAG------------GGGC- -5'
30202 3' -63 NC_006273.1 + 7786 0.66 0.74369
Target:  5'- gGAGCGCCCgGCuuuuauggAACACUCgCGUCCg-- -3'
miRNA:   3'- gCUCGCGGG-CG--------UUGUGGG-GCAGGggc -5'
30202 3' -63 NC_006273.1 + 118856 0.66 0.74369
Target:  5'- gGAGCGCgaCCGaCAACGaaggCUGUCCCUGg -3'
miRNA:   3'- gCUCGCG--GGC-GUUGUgg--GGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 234434 0.66 0.74369
Target:  5'- -cGGCGCCCaGCAcgcccgaaaacaACGCCgucgCCG-CCCCGa -3'
miRNA:   3'- gcUCGCGGG-CGU------------UGUGG----GGCaGGGGC- -5'
30202 3' -63 NC_006273.1 + 149698 0.66 0.74369
Target:  5'- gGAGCGCguucCCGCAucCACaaCGUCaCCCGc -3'
miRNA:   3'- gCUCGCG----GGCGUu-GUGggGCAG-GGGC- -5'
30202 3' -63 NC_006273.1 + 153363 0.66 0.74369
Target:  5'- cCGAG-GCCgGCGGCACgCgCGUgCCCUGc -3'
miRNA:   3'- -GCUCgCGGgCGUUGUG-GgGCA-GGGGC- -5'
30202 3' -63 NC_006273.1 + 125613 0.66 0.734731
Target:  5'- -cAGCGaCCUGUAcACACCCUGUUCCa- -3'
miRNA:   3'- gcUCGC-GGGCGU-UGUGGGGCAGGGgc -5'
30202 3' -63 NC_006273.1 + 94211 0.66 0.734731
Target:  5'- cCGGcGUGCCCGCcGCcCCCCGgcgcagUCCgCGg -3'
miRNA:   3'- -GCU-CGCGGGCGuUGuGGGGC------AGGgGC- -5'
30202 3' -63 NC_006273.1 + 141126 0.66 0.734731
Target:  5'- gCGGGCGCagcgugcggaCCGCAGCACggCCGgaaCCCUGc -3'
miRNA:   3'- -GCUCGCG----------GGCGUUGUGg-GGCa--GGGGC- -5'
30202 3' -63 NC_006273.1 + 171130 0.66 0.734731
Target:  5'- uCGGcCGCcgCCGCAACGCCC-GUgCCCGc -3'
miRNA:   3'- -GCUcGCG--GGCGUUGUGGGgCAgGGGC- -5'
30202 3' -63 NC_006273.1 + 104292 0.66 0.725697
Target:  5'- aGAGCGgCCGCGucucgGCCUCGUCCa-- -3'
miRNA:   3'- gCUCGCgGGCGUug---UGGGGCAGGggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.