miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 7050 0.66 0.706512
Target:  5'- aGAGCGUCCGCcgccagaAGCACgaugCCgGUCCaCCa -3'
miRNA:   3'- gCUCGCGGGCG-------UUGUG----GGgCAGG-GGc -5'
30202 3' -63 NC_006273.1 + 134172 0.66 0.752567
Target:  5'- gCGAcGCGUggCCGCGucCGCCUCGgugCCCCu -3'
miRNA:   3'- -GCU-CGCG--GGCGUu-GUGGGGCa--GGGGc -5'
30202 3' -63 NC_006273.1 + 213292 0.66 0.752567
Target:  5'- aCGAGUGUggucaaaccgUgGCGGCACCCUGUauccgaCCCGu -3'
miRNA:   3'- -GCUCGCG----------GgCGUUGUGGGGCAg-----GGGC- -5'
30202 3' -63 NC_006273.1 + 85112 0.66 0.752567
Target:  5'- aCGAGCuCCCGCAcguGCAUCCaCaUCUCCu -3'
miRNA:   3'- -GCUCGcGGGCGU---UGUGGG-GcAGGGGc -5'
30202 3' -63 NC_006273.1 + 174152 0.66 0.716594
Target:  5'- --uGgGCCCGCAucugcuGCACCgCCG-CCUCGa -3'
miRNA:   3'- gcuCgCGGGCGU------UGUGG-GGCaGGGGC- -5'
30202 3' -63 NC_006273.1 + 153363 0.66 0.74369
Target:  5'- cCGAG-GCCgGCGGCACgCgCGUgCCCUGc -3'
miRNA:   3'- -GCUCgCGGgCGUUGUG-GgGCA-GGGGC- -5'
30202 3' -63 NC_006273.1 + 222432 0.66 0.761354
Target:  5'- aGAG-GCCCGUAcACGCUCCacgGUCCCa- -3'
miRNA:   3'- gCUCgCGGGCGU-UGUGGGG---CAGGGgc -5'
30202 3' -63 NC_006273.1 + 83662 0.66 0.707431
Target:  5'- aGGcGCGCgaCGCGGCGCCcuuCCGUCCgCUGg -3'
miRNA:   3'- gCU-CGCGg-GCGUUGUGG---GGCAGG-GGC- -5'
30202 3' -63 NC_006273.1 + 130421 0.66 0.752567
Target:  5'- gCGAccGCGCCCGCGucaugaugGCGCUUCGcuUgCCCGa -3'
miRNA:   3'- -GCU--CGCGGGCGU--------UGUGGGGC--AgGGGC- -5'
30202 3' -63 NC_006273.1 + 38075 0.66 0.74369
Target:  5'- uCGAGCGUCa-CGGCACgCCGUCuugaacgcagggCCCGg -3'
miRNA:   3'- -GCUCGCGGgcGUUGUGgGGCAG------------GGGC- -5'
30202 3' -63 NC_006273.1 + 104292 0.66 0.725697
Target:  5'- aGAGCGgCCGCGucucgGCCUCGUCCa-- -3'
miRNA:   3'- gCUCGCgGGCGUug---UGGGGCAGGggc -5'
30202 3' -63 NC_006273.1 + 148101 0.66 0.707431
Target:  5'- gCGAGCgGCCCGCGaguuauuuguGCACCgacuccaUGUCUCUGg -3'
miRNA:   3'- -GCUCG-CGGGCGU----------UGUGGg------GCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 138037 0.66 0.751683
Target:  5'- -cGGCGCCgGCGccugguuGCugCCgCGUCCCg- -3'
miRNA:   3'- gcUCGCGGgCGU-------UGugGG-GCAGGGgc -5'
30202 3' -63 NC_006273.1 + 46971 0.66 0.717508
Target:  5'- uGAGUgacGCCgGCGuaagagaaaccgaccCACCgCGUCCCCGa -3'
miRNA:   3'- gCUCG---CGGgCGUu--------------GUGGgGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 194496 0.66 0.74369
Target:  5'- -cGGCGCCCaGCAcgcccgaaaacaACGCCgucgCCG-CCCCGa -3'
miRNA:   3'- gcUCGCGGG-CGU------------UGUGG----GGCaGGGGC- -5'
30202 3' -63 NC_006273.1 + 7786 0.66 0.74369
Target:  5'- gGAGCGCCCgGCuuuuauggAACACUCgCGUCCg-- -3'
miRNA:   3'- gCUCGCGGG-CG--------UUGUGGG-GCAGGggc -5'
30202 3' -63 NC_006273.1 + 94211 0.66 0.734731
Target:  5'- cCGGcGUGCCCGCcGCcCCCCGgcgcagUCCgCGg -3'
miRNA:   3'- -GCU-CGCGGGCGuUGuGGGGC------AGGgGC- -5'
30202 3' -63 NC_006273.1 + 72359 0.66 0.716594
Target:  5'- uGAuGCGCCUGCuguccGGCGCCCgCGUgUCCu -3'
miRNA:   3'- gCU-CGCGGGCG-----UUGUGGG-GCAgGGGc -5'
30202 3' -63 NC_006273.1 + 43032 0.66 0.72479
Target:  5'- gCGAcGCGCCacggccgCGCAacGCACCUCGaacUCCUCGa -3'
miRNA:   3'- -GCU-CGCGG-------GCGU--UGUGGGGC---AGGGGC- -5'
30202 3' -63 NC_006273.1 + 227144 0.66 0.716594
Target:  5'- -cGGCuCUCGUccCACCCCGUCCCgGc -3'
miRNA:   3'- gcUCGcGGGCGuuGUGGGGCAGGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.