miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 94211 0.66 0.734731
Target:  5'- cCGGcGUGCCCGCcGCcCCCCGgcgcagUCCgCGg -3'
miRNA:   3'- -GCU-CGCGGGCGuUGuGGGGC------AGGgGC- -5'
30202 3' -63 NC_006273.1 + 171130 0.66 0.734731
Target:  5'- uCGGcCGCcgCCGCAACGCCC-GUgCCCGc -3'
miRNA:   3'- -GCUcGCG--GGCGUUGUGGGgCAgGGGC- -5'
30202 3' -63 NC_006273.1 + 134172 0.66 0.752567
Target:  5'- gCGAcGCGUggCCGCGucCGCCUCGgugCCCCu -3'
miRNA:   3'- -GCU-CGCG--GGCGUu-GUGGGGCa--GGGGc -5'
30202 3' -63 NC_006273.1 + 83662 0.66 0.707431
Target:  5'- aGGcGCGCgaCGCGGCGCCcuuCCGUCCgCUGg -3'
miRNA:   3'- gCU-CGCGg-GCGUUGUGG---GGCAGG-GGC- -5'
30202 3' -63 NC_006273.1 + 7786 0.66 0.74369
Target:  5'- gGAGCGCCCgGCuuuuauggAACACUCgCGUCCg-- -3'
miRNA:   3'- gCUCGCGGG-CG--------UUGUGGG-GCAGGggc -5'
30202 3' -63 NC_006273.1 + 38075 0.66 0.74369
Target:  5'- uCGAGCGUCa-CGGCACgCCGUCuugaacgcagggCCCGg -3'
miRNA:   3'- -GCUCGCGGgcGUUGUGgGGCAG------------GGGC- -5'
30202 3' -63 NC_006273.1 + 153363 0.66 0.74369
Target:  5'- cCGAG-GCCgGCGGCACgCgCGUgCCCUGc -3'
miRNA:   3'- -GCUCgCGGgCGUUGUG-GgGCA-GGGGC- -5'
30202 3' -63 NC_006273.1 + 138037 0.66 0.751683
Target:  5'- -cGGCGCCgGCGccugguuGCugCCgCGUCCCg- -3'
miRNA:   3'- gcUCGCGGgCGU-------UGugGG-GCAGGGgc -5'
30202 3' -63 NC_006273.1 + 104292 0.66 0.725697
Target:  5'- aGAGCGgCCGCGucucgGCCUCGUCCa-- -3'
miRNA:   3'- gCUCGCgGGCGUug---UGGGGCAGGggc -5'
30202 3' -63 NC_006273.1 + 137349 0.67 0.679647
Target:  5'- -aAGUGCgCGCGGCGCgUUGUCCUCGc -3'
miRNA:   3'- gcUCGCGgGCGUUGUGgGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 188055 0.67 0.698214
Target:  5'- -cAGCGCCgGCGGCGCgggucucguCUCGUCCaCCa -3'
miRNA:   3'- gcUCGCGGgCGUUGUG---------GGGCAGG-GGc -5'
30202 3' -63 NC_006273.1 + 207361 0.67 0.679647
Target:  5'- --cGCGCCgcCGCAGCAUCCCGcauagCCUCu -3'
miRNA:   3'- gcuCGCGG--GCGUUGUGGGGCa----GGGGc -5'
30202 3' -63 NC_006273.1 + 91525 0.67 0.651565
Target:  5'- uCGAGaCGCCCcacaugaugaugGCGGCGCCUCaguauuuUCCCCGc -3'
miRNA:   3'- -GCUC-GCGGG------------CGUUGUGGGGc------AGGGGC- -5'
30202 3' -63 NC_006273.1 + 140525 0.67 0.67031
Target:  5'- uCGAGCcggggcgucGCCCGUcccCACCaCCGUCcaCCCGg -3'
miRNA:   3'- -GCUCG---------CGGGCGuu-GUGG-GGCAG--GGGC- -5'
30202 3' -63 NC_006273.1 + 38476 0.67 0.67031
Target:  5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3'
miRNA:   3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 234313 0.67 0.698214
Target:  5'- gGGGCGCCCgGCGGC-CCgCGggguucuaCCCGg -3'
miRNA:   3'- gCUCGCGGG-CGUUGuGGgGCag------GGGC- -5'
30202 3' -63 NC_006273.1 + 8658 0.67 0.660947
Target:  5'- uGGGUGCCCGUcacgcaGGCGCUggCGUUCCCGu -3'
miRNA:   3'- gCUCGCGGGCG------UUGUGGg-GCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 102542 0.67 0.660947
Target:  5'- -cGGCGCCCaCAGCACgCUGguaCCCGg -3'
miRNA:   3'- gcUCGCGGGcGUUGUGgGGCag-GGGC- -5'
30202 3' -63 NC_006273.1 + 30689 0.67 0.674048
Target:  5'- cCGcGGUGCCgGCGGCuaugauccugugguCCCCGUCCaCCu -3'
miRNA:   3'- -GC-UCGCGGgCGUUGu-------------GGGGCAGG-GGc -5'
30202 3' -63 NC_006273.1 + 83608 0.67 0.679647
Target:  5'- uGGGCGCgCGCGACGCCgaaCUGUaCCaCCu -3'
miRNA:   3'- gCUCGCGgGCGUUGUGG---GGCA-GG-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.