Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30202 | 3' | -63 | NC_006273.1 | + | 234546 | 1.09 | 0.001369 |
Target: 5'- cCGAGCGCCCGCAACACCCCGUCCCCGg -3' miRNA: 3'- -GCUCGCGGGCGUUGUGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194610 | 1.01 | 0.004544 |
Target: 5'- -cAGCGCCCGCAACACCCCGUCCCCGg -3' miRNA: 3'- gcUCGCGGGCGUUGUGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234294 | 0.84 | 0.067781 |
Target: 5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194356 | 0.84 | 0.067781 |
Target: 5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 45993 | 0.8 | 0.136961 |
Target: 5'- aGaAGC-CCCGCAACGCCCguCGUCCCCGc -3' miRNA: 3'- gC-UCGcGGGCGUUGUGGG--GCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194255 | 0.78 | 0.177263 |
Target: 5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234193 | 0.78 | 0.177263 |
Target: 5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 37372 | 0.77 | 0.189958 |
Target: 5'- -cGGCGaCCCGCucCACCCCGUCCuCCa -3' miRNA: 3'- gcUCGC-GGGCGuuGUGGGGCAGG-GGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 1676 | 0.76 | 0.227768 |
Target: 5'- aGGGCGCagCGCucgGCuACCCCGUCCCCc -3' miRNA: 3'- gCUCGCGg-GCGu--UG-UGGGGCAGGGGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 46411 | 0.76 | 0.243513 |
Target: 5'- gCGAGCcccaucggGCCCGCcACugCCCGuucUCCCCGu -3' miRNA: 3'- -GCUCG--------CGGGCGuUGugGGGC---AGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194425 | 0.74 | 0.315625 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 156708 | 0.74 | 0.296196 |
Target: 5'- -cGGUGCCCGCGG-ACCCCGgCCCCu -3' miRNA: 3'- gcUCGCGGGCGUUgUGGGGCaGGGGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234363 | 0.74 | 0.315625 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 68096 | 0.74 | 0.296196 |
Target: 5'- gGAGUGCCCGUcGCcgcaaACCCCGUCaugCCCGc -3' miRNA: 3'- gCUCGCGGGCGuUG-----UGGGGCAG---GGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234122 | 0.74 | 0.322312 |
Target: 5'- --cGUGUCCGCcGCGaaaggcCCCCGUCCCCGu -3' miRNA: 3'- gcuCGCGGGCGuUGU------GGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194184 | 0.74 | 0.322312 |
Target: 5'- --cGUGUCCGCcGCGaaaggcCCCCGUCCCCGu -3' miRNA: 3'- gcuCGCGGGCGuUGU------GGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 235256 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 235211 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 425 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 380 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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