miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 235211 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
30202 3' -63 NC_006273.1 + 235256 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
30202 3' -63 NC_006273.1 + 139343 0.72 0.41065
Target:  5'- -cGGUGCCCGCGACucGCCCC-UCCuCCa -3'
miRNA:   3'- gcUCGCGGGCGUUG--UGGGGcAGG-GGc -5'
30202 3' -63 NC_006273.1 + 234329 0.72 0.379573
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 194391 0.72 0.379573
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 38597 0.72 0.402733
Target:  5'- aGAGCGCCUGCGGCugUgCCGccacauggaCCCCGa -3'
miRNA:   3'- gCUCGCGGGCGUUGugG-GGCa--------GGGGC- -5'
30202 3' -63 NC_006273.1 + 119053 0.72 0.387194
Target:  5'- cCGAGCgaacgaugaugGCCCGCGACGaagagaaccCCgCCGUCCCgCGg -3'
miRNA:   3'- -GCUCG-----------CGGGCGUUGU---------GG-GGCAGGG-GC- -5'
30202 3' -63 NC_006273.1 + 35669 0.71 0.451637
Target:  5'- aGAGC-CCCaGCAcguACACCuuGUCCUCGc -3'
miRNA:   3'- gCUCGcGGG-CGU---UGUGGggCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 213527 0.71 0.42677
Target:  5'- gGGGCcgcgGCCCGCAGCAgCCaaaGUCCCa- -3'
miRNA:   3'- gCUCG----CGGGCGUUGUgGGg--CAGGGgc -5'
30202 3' -63 NC_006273.1 + 234251 0.71 0.460102
Target:  5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 21574 0.71 0.451637
Target:  5'- --cGUGCCCGuCGGCugCCUGUUCCUGc -3'
miRNA:   3'- gcuCGCGGGC-GUUGugGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 25505 0.71 0.443259
Target:  5'- aCGcGGCGCCCGCGACGugguuucaccauUCCCGUCUgUGu -3'
miRNA:   3'- -GC-UCGCGGGCGUUGU------------GGGGCAGGgGC- -5'
30202 3' -63 NC_006273.1 + 141004 0.71 0.42677
Target:  5'- --cGCGCCCGguGCccgGCCCaCGgCCCCGg -3'
miRNA:   3'- gcuCGCGGGCguUG---UGGG-GCaGGGGC- -5'
30202 3' -63 NC_006273.1 + 194313 0.71 0.460102
Target:  5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 76728 0.71 0.443259
Target:  5'- aGuGCGCCgGCAACAUCCgCGUCaCCa -3'
miRNA:   3'- gCuCGCGGgCGUUGUGGG-GCAGgGGc -5'
30202 3' -63 NC_006273.1 + 234803 0.7 0.518819
Target:  5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3'
miRNA:   3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5'
30202 3' -63 NC_006273.1 + 213151 0.7 0.503616
Target:  5'- -cGGCGCCCGUcaucuGACACUCCGUuuUCCUGc -3'
miRNA:   3'- gcUCGCGGGCG-----UUGUGGGGCA--GGGGC- -5'
30202 3' -63 NC_006273.1 + 194865 0.7 0.518819
Target:  5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3'
miRNA:   3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5'
30202 3' -63 NC_006273.1 + 120872 0.69 0.585869
Target:  5'- ---aCGCCCGCcguGCACgCCGUCgCCGa -3'
miRNA:   3'- gcucGCGGGCGu--UGUGgGGCAGgGGC- -5'
30202 3' -63 NC_006273.1 + 194212 0.69 0.567268
Target:  5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.