miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 235301 0.69 0.548822
Target:  5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5'
30202 3' -63 NC_006273.1 + 120872 0.69 0.585869
Target:  5'- ---aCGCCCGCcguGCACgCCGUCgCCGa -3'
miRNA:   3'- gcucGCGGGCGu--UGUGgGGCAGgGGC- -5'
30202 3' -63 NC_006273.1 + 194212 0.69 0.567268
Target:  5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 19430 0.69 0.579344
Target:  5'- gCGAGCaaaagccaugcacGCCCGCgGACAcacgcugaaacagguCCCCaUCCCCGa -3'
miRNA:   3'- -GCUCG-------------CGGGCG-UUGU---------------GGGGcAGGGGC- -5'
30202 3' -63 NC_006273.1 + 141460 0.69 0.576552
Target:  5'- gCGGGUccugGCCCGCGcaugcGCACCggGUCCCCu -3'
miRNA:   3'- -GCUCG----CGGGCGU-----UGUGGggCAGGGGc -5'
30202 3' -63 NC_006273.1 + 234150 0.69 0.567268
Target:  5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 94506 0.69 0.567268
Target:  5'- aCGAG-GCCgGCcaggcgGGCACCUCGcgCCCCGa -3'
miRNA:   3'- -GCUCgCGGgCG------UUGUGGGGCa-GGGGC- -5'
30202 3' -63 NC_006273.1 + 201089 0.69 0.558024
Target:  5'- --uGCGCCUGgaCGGCACCCUGUgCCUGu -3'
miRNA:   3'- gcuCGCGGGC--GUUGUGGGGCAgGGGC- -5'
30202 3' -63 NC_006273.1 + 31779 0.69 0.558024
Target:  5'- gGGGcCGUCUGC-ACGCCCCGgagugCCUCGu -3'
miRNA:   3'- gCUC-GCGGGCGuUGUGGGGCa----GGGGC- -5'
30202 3' -63 NC_006273.1 + 40408 0.69 0.548822
Target:  5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5'
30202 3' -63 NC_006273.1 + 50236 0.69 0.548822
Target:  5'- uGAGCuGCCCGCGACuCCUCGaauauucuUCCUCu -3'
miRNA:   3'- gCUCG-CGGGCGUUGuGGGGC--------AGGGGc -5'
30202 3' -63 NC_006273.1 + 30177 0.68 0.632767
Target:  5'- cCGGGgGCCCGUcgcacaccACGCUCCGUCUUCu -3'
miRNA:   3'- -GCUCgCGGGCGu-------UGUGGGGCAGGGGc -5'
30202 3' -63 NC_006273.1 + 89713 0.68 0.595214
Target:  5'- -uAGCGCCCaGCAugcgaccgccGCGCCCCaucauucCCCCGg -3'
miRNA:   3'- gcUCGCGGG-CGU----------UGUGGGGca-----GGGGC- -5'
30202 3' -63 NC_006273.1 + 45640 0.68 0.595214
Target:  5'- aCGAGCGCcaCCGCGAacuguGCCaCGUCCUCa -3'
miRNA:   3'- -GCUCGCG--GGCGUUg----UGGgGCAGGGGc -5'
30202 3' -63 NC_006273.1 + 95090 0.68 0.604583
Target:  5'- uGGGCGuuggccgguCCCGUGACGCuCCCcUCCCCc -3'
miRNA:   3'- gCUCGC---------GGGCGUUGUG-GGGcAGGGGc -5'
30202 3' -63 NC_006273.1 + 78531 0.68 0.613029
Target:  5'- cCGGGCGCCgucaggaCGUAAaagaCCCGaUCCCCGa -3'
miRNA:   3'- -GCUCGCGG-------GCGUUgug-GGGC-AGGGGC- -5'
30202 3' -63 NC_006273.1 + 142216 0.68 0.623365
Target:  5'- -cGGCGUCCGCGguggacgcaaACGCCCguugCGUCCgCCGu -3'
miRNA:   3'- gcUCGCGGGCGU----------UGUGGG----GCAGG-GGC- -5'
30202 3' -63 NC_006273.1 + 94104 0.68 0.623365
Target:  5'- uGGGCGgCCGCAccuagggagcGCgaGCCCCGUgCCgGg -3'
miRNA:   3'- gCUCGCgGGCGU----------UG--UGGGGCAgGGgC- -5'
30202 3' -63 NC_006273.1 + 89494 0.68 0.642169
Target:  5'- gCGuGGCGCCCGC--CACCUCGUCgCgGc -3'
miRNA:   3'- -GC-UCGCGGGCGuuGUGGGGCAGgGgC- -5'
30202 3' -63 NC_006273.1 + 92565 0.68 0.595214
Target:  5'- uGAGCagaCCGCGguGCACgCCCGUgCCCa -3'
miRNA:   3'- gCUCGcg-GGCGU--UGUG-GGGCAgGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.