miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 95090 0.68 0.604583
Target:  5'- uGGGCGuuggccgguCCCGUGACGCuCCCcUCCCCc -3'
miRNA:   3'- gCUCGC---------GGGCGUUGUG-GGGcAGGGGc -5'
30202 3' -63 NC_006273.1 + 45640 0.68 0.595214
Target:  5'- aCGAGCGCcaCCGCGAacuguGCCaCGUCCUCa -3'
miRNA:   3'- -GCUCGCG--GGCGUUg----UGGgGCAGGGGc -5'
30202 3' -63 NC_006273.1 + 89713 0.68 0.595214
Target:  5'- -uAGCGCCCaGCAugcgaccgccGCGCCCCaucauucCCCCGg -3'
miRNA:   3'- gcUCGCGGG-CGU----------UGUGGGGca-----GGGGC- -5'
30202 3' -63 NC_006273.1 + 30177 0.68 0.632767
Target:  5'- cCGGGgGCCCGUcgcacaccACGCUCCGUCUUCu -3'
miRNA:   3'- -GCUCgCGGGCGu-------UGUGGGGCAGGGGc -5'
30202 3' -63 NC_006273.1 + 188055 0.67 0.698214
Target:  5'- -cAGCGCCgGCGGCGCgggucucguCUCGUCCaCCa -3'
miRNA:   3'- gcUCGCGGgCGUUGUG---------GGGCAGG-GGc -5'
30202 3' -63 NC_006273.1 + 535 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
30202 3' -63 NC_006273.1 + 117241 0.67 0.651565
Target:  5'- gGGGCGCgCGUucccuCUUCGUCCCCGu -3'
miRNA:   3'- gCUCGCGgGCGuugu-GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 234313 0.67 0.698214
Target:  5'- gGGGCGCCCgGCGGC-CCgCGggguucuaCCCGg -3'
miRNA:   3'- gCUCGCGGG-CGUUGuGGgGCag------GGGC- -5'
30202 3' -63 NC_006273.1 + 233592 0.67 0.698214
Target:  5'- --cGCGCCCaGCAGCACCaUCGgcugcagucgccUUCCCGg -3'
miRNA:   3'- gcuCGCGGG-CGUUGUGG-GGC------------AGGGGC- -5'
30202 3' -63 NC_006273.1 + 127994 0.67 0.68895
Target:  5'- -cGGCGCgCCGCAcCGCCCauggGUUCCUGc -3'
miRNA:   3'- gcUCGCG-GGCGUuGUGGGg---CAGGGGC- -5'
30202 3' -63 NC_006273.1 + 137349 0.67 0.679647
Target:  5'- -aAGUGCgCGCGGCGCgUUGUCCUCGc -3'
miRNA:   3'- gcUCGCGgGCGUUGUGgGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 33423 0.67 0.679647
Target:  5'- uCGGGCGUCgGCGGCGCgCgacagCCCCGg -3'
miRNA:   3'- -GCUCGCGGgCGUUGUGgGgca--GGGGC- -5'
30202 3' -63 NC_006273.1 + 67947 0.67 0.679647
Target:  5'- aCGcAGCagGCCCuGCAACACgCCGUCCaUCa -3'
miRNA:   3'- -GC-UCG--CGGG-CGUUGUGgGGCAGG-GGc -5'
30202 3' -63 NC_006273.1 + 233369 0.67 0.67031
Target:  5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3'
miRNA:   3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 73705 0.67 0.648747
Target:  5'- gCGAGUGCcgCCGCAGCcggcagagcgccgaACCCCGUCgCa- -3'
miRNA:   3'- -GCUCGCG--GGCGUUG--------------UGGGGCAGgGgc -5'
30202 3' -63 NC_006273.1 + 221394 0.67 0.667504
Target:  5'- --cGCGCCCGCcccAguuuauacucuccgACGCCCCGUCCa-- -3'
miRNA:   3'- gcuCGCGGGCG---U--------------UGUGGGGCAGGggc -5'
30202 3' -63 NC_006273.1 + 152778 0.67 0.660947
Target:  5'- gGAGCGCgCC-CAGCACgCCCGUUUgCa -3'
miRNA:   3'- gCUCGCG-GGcGUUGUG-GGGCAGGgGc -5'
30202 3' -63 NC_006273.1 + 128981 0.67 0.66001
Target:  5'- uGAGCGCgCGCAGCACCgUGUgcauagcUUCCa -3'
miRNA:   3'- gCUCGCGgGCGUUGUGGgGCA-------GGGGc -5'
30202 3' -63 NC_006273.1 + 235366 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
30202 3' -63 NC_006273.1 + 129943 0.67 0.651565
Target:  5'- uGuAGCGCCgacgGUGAgACCCgCGUCCCUGg -3'
miRNA:   3'- gC-UCGCGGg---CGUUgUGGG-GCAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.