miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 142216 0.68 0.623365
Target:  5'- -cGGCGUCCGCGguggacgcaaACGCCCguugCGUCCgCCGu -3'
miRNA:   3'- gcUCGCGGGCGU----------UGUGGG----GCAGG-GGC- -5'
30202 3' -63 NC_006273.1 + 94104 0.68 0.623365
Target:  5'- uGGGCGgCCGCAccuagggagcGCgaGCCCCGUgCCgGg -3'
miRNA:   3'- gCUCGCgGGCGU----------UG--UGGGGCAgGGgC- -5'
30202 3' -63 NC_006273.1 + 30177 0.68 0.632767
Target:  5'- cCGGGgGCCCGUcgcacaccACGCUCCGUCUUCu -3'
miRNA:   3'- -GCUCgCGGGCGu-------UGUGGGGCAGGGGc -5'
30202 3' -63 NC_006273.1 + 89494 0.68 0.642169
Target:  5'- gCGuGGCGCCCGC--CACCUCGUCgCgGc -3'
miRNA:   3'- -GC-UCGCGGGCGuuGUGGGGCAGgGgC- -5'
30202 3' -63 NC_006273.1 + 73705 0.67 0.648747
Target:  5'- gCGAGUGCcgCCGCAGCcggcagagcgccgaACCCCGUCgCa- -3'
miRNA:   3'- -GCUCGCG--GGCGUUG--------------UGGGGCAGgGgc -5'
30202 3' -63 NC_006273.1 + 535 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
30202 3' -63 NC_006273.1 + 117241 0.67 0.651565
Target:  5'- gGGGCGCgCGUucccuCUUCGUCCCCGu -3'
miRNA:   3'- gCUCGCGgGCGuugu-GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 235366 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
30202 3' -63 NC_006273.1 + 40473 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
30202 3' -63 NC_006273.1 + 91525 0.67 0.651565
Target:  5'- uCGAGaCGCCCcacaugaugaugGCGGCGCCUCaguauuuUCCCCGc -3'
miRNA:   3'- -GCUC-GCGGG------------CGUUGUGGGGc------AGGGGC- -5'
30202 3' -63 NC_006273.1 + 129943 0.67 0.651565
Target:  5'- uGuAGCGCCgacgGUGAgACCCgCGUCCCUGg -3'
miRNA:   3'- gC-UCGCGGg---CGUUgUGGG-GCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 128981 0.67 0.66001
Target:  5'- uGAGCGCgCGCAGCACCgUGUgcauagcUUCCa -3'
miRNA:   3'- gCUCGCGgGCGUUGUGGgGCA-------GGGGc -5'
30202 3' -63 NC_006273.1 + 152778 0.67 0.660947
Target:  5'- gGAGCGCgCC-CAGCACgCCCGUUUgCa -3'
miRNA:   3'- gCUCGCG-GGcGUUGUG-GGGCAGGgGc -5'
30202 3' -63 NC_006273.1 + 102542 0.67 0.660947
Target:  5'- -cGGCGCCCaCAGCACgCUGguaCCCGg -3'
miRNA:   3'- gcUCGCGGGcGUUGUGgGGCag-GGGC- -5'
30202 3' -63 NC_006273.1 + 8658 0.67 0.660947
Target:  5'- uGGGUGCCCGUcacgcaGGCGCUggCGUUCCCGu -3'
miRNA:   3'- gCUCGCGGGCG------UUGUGGg-GCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 221394 0.67 0.667504
Target:  5'- --cGCGCCCGCcccAguuuauacucuccgACGCCCCGUCCa-- -3'
miRNA:   3'- gcuCGCGGGCG---U--------------UGUGGGGCAGGggc -5'
30202 3' -63 NC_006273.1 + 233369 0.67 0.67031
Target:  5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3'
miRNA:   3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 140525 0.67 0.67031
Target:  5'- uCGAGCcggggcgucGCCCGUcccCACCaCCGUCcaCCCGg -3'
miRNA:   3'- -GCUCG---------CGGGCGuu-GUGG-GGCAG--GGGC- -5'
30202 3' -63 NC_006273.1 + 38476 0.67 0.67031
Target:  5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3'
miRNA:   3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 30689 0.67 0.674048
Target:  5'- cCGcGGUGCCgGCGGCuaugauccugugguCCCCGUCCaCCu -3'
miRNA:   3'- -GC-UCGCGGgCGUUGu-------------GGGGCAGG-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.