miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 38476 0.67 0.67031
Target:  5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3'
miRNA:   3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 38597 0.72 0.402733
Target:  5'- aGAGCGCCUGCGGCugUgCCGccacauggaCCCCGa -3'
miRNA:   3'- gCUCGCGGGCGUUGugG-GGCa--------GGGGC- -5'
30202 3' -63 NC_006273.1 + 38700 0.67 0.698214
Target:  5'- --cGCGCCCaGCAGCACCaUCGgcugcagucgccUUCCCGg -3'
miRNA:   3'- gcuCGCGGG-CGUUGUGG-GGC------------AGGGGC- -5'
30202 3' -63 NC_006273.1 + 39420 0.67 0.698214
Target:  5'- gGGGCGCCCgGCGGC-CCgCGggguucuaCCCGg -3'
miRNA:   3'- gCUCGCGGG-CGUUGuGGgGCag------GGGC- -5'
30202 3' -63 NC_006273.1 + 40318 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
30202 3' -63 NC_006273.1 + 40363 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
30202 3' -63 NC_006273.1 + 40408 0.69 0.548822
Target:  5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5'
30202 3' -63 NC_006273.1 + 40473 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
30202 3' -63 NC_006273.1 + 43032 0.66 0.72479
Target:  5'- gCGAcGCGCCacggccgCGCAacGCACCUCGaacUCCUCGa -3'
miRNA:   3'- -GCU-CGCGG-------GCGU--UGUGGGGC---AGGGGC- -5'
30202 3' -63 NC_006273.1 + 45640 0.68 0.595214
Target:  5'- aCGAGCGCcaCCGCGAacuguGCCaCGUCCUCa -3'
miRNA:   3'- -GCUCGCG--GGCGUUg----UGGgGCAGGGGc -5'
30202 3' -63 NC_006273.1 + 45993 0.8 0.136961
Target:  5'- aGaAGC-CCCGCAACGCCCguCGUCCCCGc -3'
miRNA:   3'- gC-UCGcGGGCGUUGUGGG--GCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 46411 0.76 0.243513
Target:  5'- gCGAGCcccaucggGCCCGCcACugCCCGuucUCCCCGu -3'
miRNA:   3'- -GCUCG--------CGGGCGuUGugGGGC---AGGGGC- -5'
30202 3' -63 NC_006273.1 + 46971 0.66 0.717508
Target:  5'- uGAGUgacGCCgGCGuaagagaaaccgaccCACCgCGUCCCCGa -3'
miRNA:   3'- gCUCG---CGGgCGUu--------------GUGGgGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 50236 0.69 0.548822
Target:  5'- uGAGCuGCCCGCGACuCCUCGaauauucuUCCUCu -3'
miRNA:   3'- gCUCG-CGGGCGUUGuGGGGC--------AGGGGc -5'
30202 3' -63 NC_006273.1 + 67339 0.67 0.698214
Target:  5'- gGAGgaGCCCGUugaagaaaagaAACACCCgGUgCCCu -3'
miRNA:   3'- gCUCg-CGGGCG-----------UUGUGGGgCAgGGGc -5'
30202 3' -63 NC_006273.1 + 67947 0.67 0.679647
Target:  5'- aCGcAGCagGCCCuGCAACACgCCGUCCaUCa -3'
miRNA:   3'- -GC-UCG--CGGG-CGUUGUGgGGCAGG-GGc -5'
30202 3' -63 NC_006273.1 + 68096 0.74 0.296196
Target:  5'- gGAGUGCCCGUcGCcgcaaACCCCGUCaugCCCGc -3'
miRNA:   3'- gCUCGCGGGCGuUG-----UGGGGCAG---GGGC- -5'
30202 3' -63 NC_006273.1 + 72359 0.66 0.716594
Target:  5'- uGAuGCGCCUGCuguccGGCGCCCgCGUgUCCu -3'
miRNA:   3'- gCU-CGCGGGCG-----UUGUGGG-GCAgGGGc -5'
30202 3' -63 NC_006273.1 + 73705 0.67 0.648747
Target:  5'- gCGAGUGCcgCCGCAGCcggcagagcgccgaACCCCGUCgCa- -3'
miRNA:   3'- -GCUCGCG--GGCGUUG--------------UGGGGCAGgGgc -5'
30202 3' -63 NC_006273.1 + 76728 0.71 0.443259
Target:  5'- aGuGCGCCgGCAACAUCCgCGUCaCCa -3'
miRNA:   3'- gCuCGCGGgCGUUGUGGG-GCAGgGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.