miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 78531 0.68 0.613029
Target:  5'- cCGGGCGCCgucaggaCGUAAaagaCCCGaUCCCCGa -3'
miRNA:   3'- -GCUCGCGG-------GCGUUgug-GGGC-AGGGGC- -5'
30202 3' -63 NC_006273.1 + 83608 0.67 0.679647
Target:  5'- uGGGCGCgCGCGACGCCgaaCUGUaCCaCCu -3'
miRNA:   3'- gCUCGCGgGCGUUGUGG---GGCA-GG-GGc -5'
30202 3' -63 NC_006273.1 + 83662 0.66 0.707431
Target:  5'- aGGcGCGCgaCGCGGCGCCcuuCCGUCCgCUGg -3'
miRNA:   3'- gCU-CGCGg-GCGUUGUGG---GGCAGG-GGC- -5'
30202 3' -63 NC_006273.1 + 85112 0.66 0.752567
Target:  5'- aCGAGCuCCCGCAcguGCAUCCaCaUCUCCu -3'
miRNA:   3'- -GCUCGcGGGCGU---UGUGGG-GcAGGGGc -5'
30202 3' -63 NC_006273.1 + 89494 0.68 0.642169
Target:  5'- gCGuGGCGCCCGC--CACCUCGUCgCgGc -3'
miRNA:   3'- -GC-UCGCGGGCGuuGUGGGGCAGgGgC- -5'
30202 3' -63 NC_006273.1 + 89713 0.68 0.595214
Target:  5'- -uAGCGCCCaGCAugcgaccgccGCGCCCCaucauucCCCCGg -3'
miRNA:   3'- gcUCGCGGG-CGU----------UGUGGGGca-----GGGGC- -5'
30202 3' -63 NC_006273.1 + 91525 0.67 0.651565
Target:  5'- uCGAGaCGCCCcacaugaugaugGCGGCGCCUCaguauuuUCCCCGc -3'
miRNA:   3'- -GCUC-GCGGG------------CGUUGUGGGGc------AGGGGC- -5'
30202 3' -63 NC_006273.1 + 92565 0.68 0.595214
Target:  5'- uGAGCagaCCGCGguGCACgCCCGUgCCCa -3'
miRNA:   3'- gCUCGcg-GGCGU--UGUG-GGGCAgGGGc -5'
30202 3' -63 NC_006273.1 + 93011 0.67 0.68895
Target:  5'- uGAGCGgCUGCGgaacGCGgCCCGggCCCGa -3'
miRNA:   3'- gCUCGCgGGCGU----UGUgGGGCagGGGC- -5'
30202 3' -63 NC_006273.1 + 94104 0.68 0.623365
Target:  5'- uGGGCGgCCGCAccuagggagcGCgaGCCCCGUgCCgGg -3'
miRNA:   3'- gCUCGCgGGCGU----------UG--UGGGGCAgGGgC- -5'
30202 3' -63 NC_006273.1 + 94211 0.66 0.734731
Target:  5'- cCGGcGUGCCCGCcGCcCCCCGgcgcagUCCgCGg -3'
miRNA:   3'- -GCU-CGCGGGCGuUGuGGGGC------AGGgGC- -5'
30202 3' -63 NC_006273.1 + 94506 0.69 0.567268
Target:  5'- aCGAG-GCCgGCcaggcgGGCACCUCGcgCCCCGa -3'
miRNA:   3'- -GCUCgCGGgCG------UUGUGGGGCa-GGGGC- -5'
30202 3' -63 NC_006273.1 + 95090 0.68 0.604583
Target:  5'- uGGGCGuuggccgguCCCGUGACGCuCCCcUCCCCc -3'
miRNA:   3'- gCUCGC---------GGGCGUUGUG-GGGcAGGGGc -5'
30202 3' -63 NC_006273.1 + 102542 0.67 0.660947
Target:  5'- -cGGCGCCCaCAGCACgCUGguaCCCGg -3'
miRNA:   3'- gcUCGCGGGcGUUGUGgGGCag-GGGC- -5'
30202 3' -63 NC_006273.1 + 104292 0.66 0.725697
Target:  5'- aGAGCGgCCGCGucucgGCCUCGUCCa-- -3'
miRNA:   3'- gCUCGCgGGCGUug---UGGGGCAGGggc -5'
30202 3' -63 NC_006273.1 + 111139 0.67 0.692661
Target:  5'- --cGCGCCCGCAgacaccaagcaugccACGCgUCGaCCCCa -3'
miRNA:   3'- gcuCGCGGGCGU---------------UGUGgGGCaGGGGc -5'
30202 3' -63 NC_006273.1 + 117241 0.67 0.651565
Target:  5'- gGGGCGCgCGUucccuCUUCGUCCCCGu -3'
miRNA:   3'- gCUCGCGgGCGuugu-GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 118856 0.66 0.74369
Target:  5'- gGAGCGCgaCCGaCAACGaaggCUGUCCCUGg -3'
miRNA:   3'- gCUCGCG--GGC-GUUGUgg--GGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 119053 0.72 0.387194
Target:  5'- cCGAGCgaacgaugaugGCCCGCGACGaagagaaccCCgCCGUCCCgCGg -3'
miRNA:   3'- -GCUCG-----------CGGGCGUUGU---------GG-GGCAGGG-GC- -5'
30202 3' -63 NC_006273.1 + 120872 0.69 0.585869
Target:  5'- ---aCGCCCGCcguGCACgCCGUCgCCGa -3'
miRNA:   3'- gcucGCGGGCGu--UGUGgGGCAGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.