miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 123829 0.67 0.698214
Target:  5'- aGAGCGuucCCCGuCGAaucaGCgUCGUCCCCa -3'
miRNA:   3'- gCUCGC---GGGC-GUUg---UGgGGCAGGGGc -5'
30202 3' -63 NC_006273.1 + 125613 0.66 0.734731
Target:  5'- -cAGCGaCCUGUAcACACCCUGUUCCa- -3'
miRNA:   3'- gcUCGC-GGGCGU-UGUGGGGCAGGGgc -5'
30202 3' -63 NC_006273.1 + 127994 0.67 0.68895
Target:  5'- -cGGCGCgCCGCAcCGCCCauggGUUCCUGc -3'
miRNA:   3'- gcUCGCG-GGCGUuGUGGGg---CAGGGGC- -5'
30202 3' -63 NC_006273.1 + 128981 0.67 0.66001
Target:  5'- uGAGCGCgCGCAGCACCgUGUgcauagcUUCCa -3'
miRNA:   3'- gCUCGCGgGCGUUGUGGgGCA-------GGGGc -5'
30202 3' -63 NC_006273.1 + 129943 0.67 0.651565
Target:  5'- uGuAGCGCCgacgGUGAgACCCgCGUCCCUGg -3'
miRNA:   3'- gC-UCGCGGg---CGUUgUGGG-GCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 130421 0.66 0.752567
Target:  5'- gCGAccGCGCCCGCGucaugaugGCGCUUCGcuUgCCCGa -3'
miRNA:   3'- -GCU--CGCGGGCGU--------UGUGGGGC--AgGGGC- -5'
30202 3' -63 NC_006273.1 + 134172 0.66 0.752567
Target:  5'- gCGAcGCGUggCCGCGucCGCCUCGgugCCCCu -3'
miRNA:   3'- -GCU-CGCG--GGCGUu-GUGGGGCa--GGGGc -5'
30202 3' -63 NC_006273.1 + 136844 0.68 0.613968
Target:  5'- gGAGgGCCC-CGACGuCCCC-UCuCCCGg -3'
miRNA:   3'- gCUCgCGGGcGUUGU-GGGGcAG-GGGC- -5'
30202 3' -63 NC_006273.1 + 137349 0.67 0.679647
Target:  5'- -aAGUGCgCGCGGCGCgUUGUCCUCGc -3'
miRNA:   3'- gcUCGCGgGCGUUGUGgGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 138037 0.66 0.751683
Target:  5'- -cGGCGCCgGCGccugguuGCugCCgCGUCCCg- -3'
miRNA:   3'- gcUCGCGGgCGU-------UGugGG-GCAGGGgc -5'
30202 3' -63 NC_006273.1 + 139343 0.72 0.41065
Target:  5'- -cGGUGCCCGCGACucGCCCC-UCCuCCa -3'
miRNA:   3'- gcUCGCGGGCGUUG--UGGGGcAGG-GGc -5'
30202 3' -63 NC_006273.1 + 140525 0.67 0.67031
Target:  5'- uCGAGCcggggcgucGCCCGUcccCACCaCCGUCcaCCCGg -3'
miRNA:   3'- -GCUCG---------CGGGCGuu-GUGG-GGCAG--GGGC- -5'
30202 3' -63 NC_006273.1 + 141004 0.71 0.42677
Target:  5'- --cGCGCCCGguGCccgGCCCaCGgCCCCGg -3'
miRNA:   3'- gcuCGCGGGCguUG---UGGG-GCaGGGGC- -5'
30202 3' -63 NC_006273.1 + 141126 0.66 0.734731
Target:  5'- gCGGGCGCagcgugcggaCCGCAGCACggCCGgaaCCCUGc -3'
miRNA:   3'- -GCUCGCG----------GGCGUUGUGg-GGCa--GGGGC- -5'
30202 3' -63 NC_006273.1 + 141460 0.69 0.576552
Target:  5'- gCGGGUccugGCCCGCGcaugcGCACCggGUCCCCu -3'
miRNA:   3'- -GCUCG----CGGGCGU-----UGUGGggCAGGGGc -5'
30202 3' -63 NC_006273.1 + 142216 0.68 0.623365
Target:  5'- -cGGCGUCCGCGguggacgcaaACGCCCguugCGUCCgCCGu -3'
miRNA:   3'- gcUCGCGGGCGU----------UGUGGG----GCAGG-GGC- -5'
30202 3' -63 NC_006273.1 + 148101 0.66 0.707431
Target:  5'- gCGAGCgGCCCGCGaguuauuuguGCACCgacuccaUGUCUCUGg -3'
miRNA:   3'- -GCUCG-CGGGCGU----------UGUGGg------GCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 149698 0.66 0.74369
Target:  5'- gGAGCGCguucCCGCAucCACaaCGUCaCCCGc -3'
miRNA:   3'- gCUCGCG----GGCGUu-GUGggGCAG-GGGC- -5'
30202 3' -63 NC_006273.1 + 152778 0.67 0.660947
Target:  5'- gGAGCGCgCC-CAGCACgCCCGUUUgCa -3'
miRNA:   3'- gCUCGCG-GGcGUUGUG-GGGCAGGgGc -5'
30202 3' -63 NC_006273.1 + 153363 0.66 0.74369
Target:  5'- cCGAG-GCCgGCGGCACgCgCGUgCCCUGc -3'
miRNA:   3'- -GCUCgCGGgCGUUGUG-GgGCA-GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.