miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 235366 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
30202 3' -63 NC_006273.1 + 235301 0.69 0.548822
Target:  5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5'
30202 3' -63 NC_006273.1 + 235256 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
30202 3' -63 NC_006273.1 + 235211 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
30202 3' -63 NC_006273.1 + 234803 0.7 0.518819
Target:  5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3'
miRNA:   3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5'
30202 3' -63 NC_006273.1 + 234546 1.09 0.001369
Target:  5'- cCGAGCGCCCGCAACACCCCGUCCCCGg -3'
miRNA:   3'- -GCUCGCGGGCGUUGUGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 234434 0.66 0.74369
Target:  5'- -cGGCGCCCaGCAcgcccgaaaacaACGCCgucgCCG-CCCCGa -3'
miRNA:   3'- gcUCGCGGG-CGU------------UGUGG----GGCaGGGGC- -5'
30202 3' -63 NC_006273.1 + 234363 0.74 0.315625
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 234329 0.72 0.379573
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 234313 0.67 0.698214
Target:  5'- gGGGCGCCCgGCGGC-CCgCGggguucuaCCCGg -3'
miRNA:   3'- gCUCGCGGG-CGUUGuGGgGCag------GGGC- -5'
30202 3' -63 NC_006273.1 + 234294 0.84 0.067781
Target:  5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 234251 0.71 0.460102
Target:  5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 234193 0.78 0.177263
Target:  5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 234150 0.69 0.567268
Target:  5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 234122 0.74 0.322312
Target:  5'- --cGUGUCCGCcGCGaaaggcCCCCGUCCCCGu -3'
miRNA:   3'- gcuCGCGGGCGuUGU------GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 233592 0.67 0.698214
Target:  5'- --cGCGCCCaGCAGCACCaUCGgcugcagucgccUUCCCGg -3'
miRNA:   3'- gcuCGCGGG-CGUUGUGG-GGC------------AGGGGC- -5'
30202 3' -63 NC_006273.1 + 233369 0.67 0.67031
Target:  5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3'
miRNA:   3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 227144 0.66 0.716594
Target:  5'- -cGGCuCUCGUccCACCCCGUCCCgGc -3'
miRNA:   3'- gcUCGcGGGCGuuGUGGGGCAGGGgC- -5'
30202 3' -63 NC_006273.1 + 222432 0.66 0.761354
Target:  5'- aGAG-GCCCGUAcACGCUCCacgGUCCCa- -3'
miRNA:   3'- gCUCgCGGGCGU-UGUGGGG---CAGGGgc -5'
30202 3' -63 NC_006273.1 + 221394 0.67 0.667504
Target:  5'- --cGCGCCCGCcccAguuuauacucuccgACGCCCCGUCCa-- -3'
miRNA:   3'- gcuCGCGGGCG---U--------------UGUGGGGCAGGggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.