miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30202 3' -63 NC_006273.1 + 213822 0.68 0.613968
Target:  5'- aCGAGaggcucaGCCgcugCGCcGCGCCgCCGUCCUCGa -3'
miRNA:   3'- -GCUCg------CGG----GCGuUGUGG-GGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 213527 0.71 0.42677
Target:  5'- gGGGCcgcgGCCCGCAGCAgCCaaaGUCCCa- -3'
miRNA:   3'- gCUCG----CGGGCGUUGUgGGg--CAGGGgc -5'
30202 3' -63 NC_006273.1 + 213292 0.66 0.752567
Target:  5'- aCGAGUGUggucaaaccgUgGCGGCACCCUGUauccgaCCCGu -3'
miRNA:   3'- -GCUCGCG----------GgCGUUGUGGGGCAg-----GGGC- -5'
30202 3' -63 NC_006273.1 + 213151 0.7 0.503616
Target:  5'- -cGGCGCCCGUcaucuGACACUCCGUuuUCCUGc -3'
miRNA:   3'- gcUCGCGGGCG-----UUGUGGGGCA--GGGGC- -5'
30202 3' -63 NC_006273.1 + 207361 0.67 0.679647
Target:  5'- --cGCGCCgcCGCAGCAUCCCGcauagCCUCu -3'
miRNA:   3'- gcuCGCGG--GCGUUGUGGGGCa----GGGGc -5'
30202 3' -63 NC_006273.1 + 201089 0.69 0.558024
Target:  5'- --uGCGCCUGgaCGGCACCCUGUgCCUGu -3'
miRNA:   3'- gcuCGCGGGC--GUUGUGGGGCAgGGGC- -5'
30202 3' -63 NC_006273.1 + 197196 0.69 0.539668
Target:  5'- uGAGCGgCCGCGGCGCgggCUCGgcgUCCCGc -3'
miRNA:   3'- gCUCGCgGGCGUUGUG---GGGCa--GGGGC- -5'
30202 3' -63 NC_006273.1 + 194865 0.7 0.518819
Target:  5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3'
miRNA:   3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5'
30202 3' -63 NC_006273.1 + 194757 0.68 0.595214
Target:  5'- aGAGUGCCC------CCCCGUCUCCGg -3'
miRNA:   3'- gCUCGCGGGcguuguGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 194610 1.01 0.004544
Target:  5'- -cAGCGCCCGCAACACCCCGUCCCCGg -3'
miRNA:   3'- gcUCGCGGGCGUUGUGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 194496 0.66 0.74369
Target:  5'- -cGGCGCCCaGCAcgcccgaaaacaACGCCgucgCCG-CCCCGa -3'
miRNA:   3'- gcUCGCGGG-CGU------------UGUGG----GGCaGGGGC- -5'
30202 3' -63 NC_006273.1 + 194425 0.74 0.315625
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 194391 0.72 0.379573
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 194356 0.84 0.067781
Target:  5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 194313 0.71 0.460102
Target:  5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 194255 0.78 0.177263
Target:  5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 194212 0.69 0.567268
Target:  5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 194184 0.74 0.322312
Target:  5'- --cGUGUCCGCcGCGaaaggcCCCCGUCCCCGu -3'
miRNA:   3'- gcuCGCGGGCGuUGU------GGGGCAGGGGC- -5'
30202 3' -63 NC_006273.1 + 188055 0.67 0.698214
Target:  5'- -cAGCGCCgGCGGCGCgggucucguCUCGUCCaCCa -3'
miRNA:   3'- gcUCGCGGgCGUUGUG---------GGGCAGG-GGc -5'
30202 3' -63 NC_006273.1 + 183752 0.66 0.72479
Target:  5'- aCGGGUGCuguCCGCGcCGCCgagccugCCGUCgCCCGu -3'
miRNA:   3'- -GCUCGCG---GGCGUuGUGG-------GGCAG-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.