Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30202 | 3' | -63 | NC_006273.1 | + | 1676 | 0.76 | 0.227768 |
Target: 5'- aGGGCGCagCGCucgGCuACCCCGUCCCCc -3' miRNA: 3'- gCUCGCGg-GCGu--UG-UGGGGCAGGGGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 37372 | 0.77 | 0.189958 |
Target: 5'- -cGGCGaCCCGCucCACCCCGUCCuCCa -3' miRNA: 3'- gcUCGC-GGGCGuuGUGGGGCAGG-GGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194255 | 0.78 | 0.177263 |
Target: 5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 45993 | 0.8 | 0.136961 |
Target: 5'- aGaAGC-CCCGCAACGCCCguCGUCCCCGc -3' miRNA: 3'- gC-UCGcGGGCGUUGUGGG--GCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194356 | 0.84 | 0.067781 |
Target: 5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194391 | 0.72 | 0.379573 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 38597 | 0.72 | 0.402733 |
Target: 5'- aGAGCGCCUGCGGCugUgCCGccacauggaCCCCGa -3' miRNA: 3'- gCUCGCGGGCGUUGugG-GGCa--------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 78531 | 0.68 | 0.613029 |
Target: 5'- cCGGGCGCCgucaggaCGUAAaagaCCCGaUCCCCGa -3' miRNA: 3'- -GCUCGCGG-------GCGUUgug-GGGC-AGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 95090 | 0.68 | 0.604583 |
Target: 5'- uGGGCGuuggccgguCCCGUGACGCuCCCcUCCCCc -3' miRNA: 3'- gCUCGC---------GGGCGUUGUG-GGGcAGGGGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 45640 | 0.68 | 0.595214 |
Target: 5'- aCGAGCGCcaCCGCGAacuguGCCaCGUCCUCa -3' miRNA: 3'- -GCUCGCG--GGCGUUg----UGGgGCAGGGGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 89713 | 0.68 | 0.595214 |
Target: 5'- -uAGCGCCCaGCAugcgaccgccGCGCCCCaucauucCCCCGg -3' miRNA: 3'- gcUCGCGGG-CGU----------UGUGGGGca-----GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 120872 | 0.69 | 0.585869 |
Target: 5'- ---aCGCCCGCcguGCACgCCGUCgCCGa -3' miRNA: 3'- gcucGCGGGCGu--UGUGgGGCAGgGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194212 | 0.69 | 0.567268 |
Target: 5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 235301 | 0.69 | 0.548822 |
Target: 5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 470 | 0.69 | 0.548822 |
Target: 5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194865 | 0.7 | 0.518819 |
Target: 5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3' miRNA: 3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194313 | 0.71 | 0.460102 |
Target: 5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 35669 | 0.71 | 0.451637 |
Target: 5'- aGAGC-CCCaGCAcguACACCuuGUCCUCGc -3' miRNA: 3'- gCUCGcGGG-CGU---UGUGGggCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 76728 | 0.71 | 0.443259 |
Target: 5'- aGuGCGCCgGCAACAUCCgCGUCaCCa -3' miRNA: 3'- gCuCGCGGgCGUUGUGGG-GCAGgGGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 213527 | 0.71 | 0.42677 |
Target: 5'- gGGGCcgcgGCCCGCAGCAgCCaaaGUCCCa- -3' miRNA: 3'- gCUCG----CGGGCGUUGUgGGg--CAGGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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