Results 61 - 80 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30202 | 3' | -63 | NC_006273.1 | + | 470 | 0.69 | 0.548822 |
Target: 5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 235301 | 0.69 | 0.548822 |
Target: 5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 139343 | 0.72 | 0.41065 |
Target: 5'- -cGGUGCCCGCGACucGCCCC-UCCuCCa -3' miRNA: 3'- gcUCGCGGGCGUUG--UGGGGcAGG-GGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 141004 | 0.71 | 0.42677 |
Target: 5'- --cGCGCCCGguGCccgGCCCaCGgCCCCGg -3' miRNA: 3'- gcuCGCGGGCguUG---UGGG-GCaGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 25505 | 0.71 | 0.443259 |
Target: 5'- aCGcGGCGCCCGCGACGugguuucaccauUCCCGUCUgUGu -3' miRNA: 3'- -GC-UCGCGGGCGUUGU------------GGGGCAGGgGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 21574 | 0.71 | 0.451637 |
Target: 5'- --cGUGCCCGuCGGCugCCUGUUCCUGc -3' miRNA: 3'- gcuCGCGGGC-GUUGugGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234251 | 0.71 | 0.460102 |
Target: 5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 213151 | 0.7 | 0.503616 |
Target: 5'- -cGGCGCCCGUcaucuGACACUCCGUuuUCCUGc -3' miRNA: 3'- gcUCGCGGGCG-----UUGUGGGGCA--GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234803 | 0.7 | 0.518819 |
Target: 5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3' miRNA: 3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 197196 | 0.69 | 0.539668 |
Target: 5'- uGAGCGgCCGCGGCGCgggCUCGgcgUCCCGc -3' miRNA: 3'- gCUCGCgGGCGUUGUG---GGGCa--GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 119053 | 0.72 | 0.387194 |
Target: 5'- cCGAGCgaacgaugaugGCCCGCGACGaagagaaccCCgCCGUCCCgCGg -3' miRNA: 3'- -GCUCG-----------CGGGCGUUGU---------GG-GGCAGGG-GC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234329 | 0.72 | 0.379573 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 134172 | 0.66 | 0.752567 |
Target: 5'- gCGAcGCGUggCCGCGucCGCCUCGgugCCCCu -3' miRNA: 3'- -GCU-CGCG--GGCGUu-GUGGGGCa--GGGGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234294 | 0.84 | 0.067781 |
Target: 5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234193 | 0.78 | 0.177263 |
Target: 5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 68096 | 0.74 | 0.296196 |
Target: 5'- gGAGUGCCCGUcGCcgcaaACCCCGUCaugCCCGc -3' miRNA: 3'- gCUCGCGGGCGuUG-----UGGGGCAG---GGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234363 | 0.74 | 0.315625 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234122 | 0.74 | 0.322312 |
Target: 5'- --cGUGUCCGCcGCGaaaggcCCCCGUCCCCGu -3' miRNA: 3'- gcuCGCGGGCGuUGU------GGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 40318 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 40363 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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