Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30202 | 3' | -63 | NC_006273.1 | + | 94506 | 0.69 | 0.567268 |
Target: 5'- aCGAG-GCCgGCcaggcgGGCACCUCGcgCCCCGa -3' miRNA: 3'- -GCUCgCGGgCG------UUGUGGGGCa-GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 40408 | 0.69 | 0.548822 |
Target: 5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 139343 | 0.72 | 0.41065 |
Target: 5'- -cGGUGCCCGCGACucGCCCC-UCCuCCa -3' miRNA: 3'- gcUCGCGGGCGUUG--UGGGGcAGG-GGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 68096 | 0.74 | 0.296196 |
Target: 5'- gGAGUGCCCGUcGCcgcaaACCCCGUCaugCCCGc -3' miRNA: 3'- gCUCGCGGGCGuUG-----UGGGGCAG---GGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 91525 | 0.67 | 0.651565 |
Target: 5'- uCGAGaCGCCCcacaugaugaugGCGGCGCCUCaguauuuUCCCCGc -3' miRNA: 3'- -GCUC-GCGGG------------CGUUGUGGGGc------AGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 194757 | 0.68 | 0.595214 |
Target: 5'- aGAGUGCCC------CCCCGUCUCCGg -3' miRNA: 3'- gCUCGCGGGcguuguGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 197196 | 0.69 | 0.539668 |
Target: 5'- uGAGCGgCCGCGGCGCgggCUCGgcgUCCCGc -3' miRNA: 3'- gCUCGCgGGCGUUGUG---GGGCa--GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234193 | 0.78 | 0.177263 |
Target: 5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 92565 | 0.68 | 0.595214 |
Target: 5'- uGAGCagaCCGCGguGCACgCCCGUgCCCa -3' miRNA: 3'- gCUCGcg-GGCGU--UGUG-GGGCAgGGGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234294 | 0.84 | 0.067781 |
Target: 5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 50236 | 0.69 | 0.548822 |
Target: 5'- uGAGCuGCCCGCGACuCCUCGaauauucuUCCUCu -3' miRNA: 3'- gCUCG-CGGGCGUUGuGGGGC--------AGGGGc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234150 | 0.69 | 0.567268 |
Target: 5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234251 | 0.71 | 0.460102 |
Target: 5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 141004 | 0.71 | 0.42677 |
Target: 5'- --cGCGCCCGguGCccgGCCCaCGgCCCCGg -3' miRNA: 3'- gcuCGCGGGCguUG---UGGG-GCaGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 40363 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 234363 | 0.74 | 0.315625 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 38476 | 0.67 | 0.67031 |
Target: 5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3' miRNA: 3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 8658 | 0.67 | 0.660947 |
Target: 5'- uGGGUGCCCGUcacgcaGGCGCUggCGUUCCCGu -3' miRNA: 3'- gCUCGCGGGCG------UUGUGGg-GCAGGGGC- -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 73705 | 0.67 | 0.648747 |
Target: 5'- gCGAGUGCcgCCGCAGCcggcagagcgccgaACCCCGUCgCa- -3' miRNA: 3'- -GCUCGCG--GGCGUUG--------------UGGGGCAGgGgc -5' |
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30202 | 3' | -63 | NC_006273.1 | + | 161191 | 0.68 | 0.604583 |
Target: 5'- gCGAGCGCCCGUca-AgCUCGUCUcgCCGg -3' miRNA: 3'- -GCUCGCGGGCGuugUgGGGCAGG--GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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