Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30203 | 3' | -55.9 | NC_006273.1 | + | 178803 | 0.66 | 0.97077 |
Target: 5'- aCCUgacGUCCaaaGGUGgaUCGGGCggcggcGGCGGAGg -3' miRNA: 3'- -GGA---CAGG---UCAC--AGCCUGa-----CCGCCUUg -5' |
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30203 | 3' | -55.9 | NC_006273.1 | + | 14003 | 0.67 | 0.927809 |
Target: 5'- aCUGgggCGGgcgCGGGgUGGCGGAGCg -3' miRNA: 3'- gGACag-GUCacaGCCUgACCGCCUUG- -5' |
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30203 | 3' | -55.9 | NC_006273.1 | + | 93650 | 0.68 | 0.921528 |
Target: 5'- --cGUUCuacgaaaaCGGACUGGCGGAACg -3' miRNA: 3'- ggaCAGGucaca---GCCUGACCGCCUUG- -5' |
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30203 | 3' | -55.9 | NC_006273.1 | + | 190027 | 0.69 | 0.886695 |
Target: 5'- --gGUUgCGGUGggaugaCGGGCUGGUGGGACu -3' miRNA: 3'- ggaCAG-GUCACa-----GCCUGACCGCCUUG- -5' |
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30203 | 3' | -55.9 | NC_006273.1 | + | 194766 | 1.12 | 0.003256 |
Target: 5'- cCCUGUCCAGUGUCGGACUGGCGGAACg -3' miRNA: 3'- -GGACAGGUCACAGCCUGACCGCCUUG- -5' |
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30203 | 3' | -55.9 | NC_006273.1 | + | 234704 | 1.12 | 0.003256 |
Target: 5'- cCCUGUCCAGUGUCGGACUGGCGGAACg -3' miRNA: 3'- -GGACAGGUCACAGCCUGACCGCCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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