miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30203 5' -60 NC_006273.1 + 80384 0.66 0.852756
Target:  5'- ---gGGAGCgGCGgccgugGCGgCGGCAGCGg -3'
miRNA:   3'- gacaCCUCGgUGUg-----CGUgGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 47275 0.66 0.852756
Target:  5'- ---cGGGGCCA--UGUACuaCGGCAGCGg -3'
miRNA:   3'- gacaCCUCGGUguGCGUG--GCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 157368 0.66 0.852756
Target:  5'- -gGUGGGGCUGCGuCGcCugCGaCGGCGg -3'
miRNA:   3'- gaCACCUCGGUGU-GC-GugGCcGUCGC- -5'
30203 5' -60 NC_006273.1 + 109312 0.66 0.852756
Target:  5'- -gGUGGA-CCGCugGauCCGGCAcGCGg -3'
miRNA:   3'- gaCACCUcGGUGugCguGGCCGU-CGC- -5'
30203 5' -60 NC_006273.1 + 1 0.66 0.852756
Target:  5'- ------AGCCcuguCcCGCACCGGCGGCGg -3'
miRNA:   3'- gacaccUCGGu---GuGCGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 73115 0.66 0.850512
Target:  5'- gCUGgaGGAccgccgacgucugcGCCGCAaacUGCGCCGGUGGCu -3'
miRNA:   3'- -GACa-CCU--------------CGGUGU---GCGUGGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 170609 0.66 0.845212
Target:  5'- uCUGUagaccGGcAGCCGCcCGCcgGCgGGCAGCu -3'
miRNA:   3'- -GACA-----CC-UCGGUGuGCG--UGgCCGUCGc -5'
30203 5' -60 NC_006273.1 + 130797 0.66 0.845212
Target:  5'- gCUG-GGccAGCUGCAuCGUGCCGGC-GCGa -3'
miRNA:   3'- -GACaCC--UCGGUGU-GCGUGGCCGuCGC- -5'
30203 5' -60 NC_006273.1 + 2151 0.66 0.845212
Target:  5'- -gGUGGucgGGgCGgACGCGaCGGCGGCGg -3'
miRNA:   3'- gaCACC---UCgGUgUGCGUgGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 68390 0.66 0.845212
Target:  5'- cCUGUGGAcugaucugGUCACGCGCcACaaaauGaGCGGCGg -3'
miRNA:   3'- -GACACCU--------CGGUGUGCG-UGg----C-CGUCGC- -5'
30203 5' -60 NC_006273.1 + 2248 0.66 0.845212
Target:  5'- ---gGGAccguGCCGCGCGCcauGCUGGUGGUGg -3'
miRNA:   3'- gacaCCU----CGGUGUGCG---UGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 116497 0.66 0.845212
Target:  5'- -aGUGGAGCacugguuGCACGCGCagGGcCAGgGa -3'
miRNA:   3'- gaCACCUCGg------UGUGCGUGg-CC-GUCgC- -5'
30203 5' -60 NC_006273.1 + 76603 0.66 0.845212
Target:  5'- uUGUGuaaccGCUACGCGUccguggccgcgGCCGGCGGCc -3'
miRNA:   3'- gACACcu---CGGUGUGCG-----------UGGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 197141 0.66 0.845212
Target:  5'- ---gGGAccguGCCGCGCGCcauGCUGGUGGUGg -3'
miRNA:   3'- gacaCCU----CGGUGUGCG---UGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 197044 0.66 0.845212
Target:  5'- -gGUGGucgGGgCGgACGCGaCGGCGGCGg -3'
miRNA:   3'- gaCACC---UCgGUgUGCGUgGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 77301 0.66 0.837494
Target:  5'- -------uCCACuCGCACCGGCAGCa -3'
miRNA:   3'- gacaccucGGUGuGCGUGGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 72694 0.66 0.837494
Target:  5'- -gGUGGGGUgAa--GCACgGGCAGCc -3'
miRNA:   3'- gaCACCUCGgUgugCGUGgCCGUCGc -5'
30203 5' -60 NC_006273.1 + 85691 0.66 0.837494
Target:  5'- ---cGaGAGCCAguCGcCACCGGCcGCGc -3'
miRNA:   3'- gacaC-CUCGGUguGC-GUGGCCGuCGC- -5'
30203 5' -60 NC_006273.1 + 1734 0.66 0.837494
Target:  5'- ---gGGAGCU----GCGCCGGCGGUGg -3'
miRNA:   3'- gacaCCUCGGugugCGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 87295 0.66 0.837494
Target:  5'- gCUGUGGuuuCCACGCccaGUGCCGGU-GCGg -3'
miRNA:   3'- -GACACCuc-GGUGUG---CGUGGCCGuCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.