miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30203 5' -60 NC_006273.1 + 72694 0.66 0.837494
Target:  5'- -gGUGGGGUgAa--GCACgGGCAGCc -3'
miRNA:   3'- gaCACCUCGgUgugCGUGgCCGUCGc -5'
30203 5' -60 NC_006273.1 + 188911 0.66 0.829606
Target:  5'- ---aGG-GCCugGgCGuCACCGGCGGUGu -3'
miRNA:   3'- gacaCCuCGGugU-GC-GUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 197044 0.66 0.845212
Target:  5'- -gGUGGucgGGgCGgACGCGaCGGCGGCGg -3'
miRNA:   3'- gaCACC---UCgGUgUGCGUgGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 69591 0.66 0.829606
Target:  5'- ----aGAGCCACACGCACCccGCGGa- -3'
miRNA:   3'- gacacCUCGGUGUGCGUGGc-CGUCgc -5'
30203 5' -60 NC_006273.1 + 145078 0.66 0.837494
Target:  5'- ---cGcGGGCgACGC-CGCUGGCGGCGg -3'
miRNA:   3'- gacaC-CUCGgUGUGcGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 117858 0.66 0.829606
Target:  5'- -cGUGGucAGUCGCAgaagcaGCACCgucacgggGGCAGCGg -3'
miRNA:   3'- gaCACC--UCGGUGUg-----CGUGG--------CCGUCGC- -5'
30203 5' -60 NC_006273.1 + 116497 0.66 0.845212
Target:  5'- -aGUGGAGCacugguuGCACGCGCagGGcCAGgGa -3'
miRNA:   3'- gaCACCUCGg------UGUGCGUGg-CC-GUCgC- -5'
30203 5' -60 NC_006273.1 + 196626 0.66 0.837494
Target:  5'- ---gGGAGCU----GCGCCGGCGGUGg -3'
miRNA:   3'- gacaCCUCGGugugCGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 209629 0.66 0.837494
Target:  5'- ---gGGAGCCAacaACGCuacGCCGGUgcAGCu -3'
miRNA:   3'- gacaCCUCGGUg--UGCG---UGGCCG--UCGc -5'
30203 5' -60 NC_006273.1 + 28566 0.66 0.821557
Target:  5'- -cGUGGAugUGCAUGCAgCCGGcCAGCGc -3'
miRNA:   3'- gaCACCUcgGUGUGCGU-GGCC-GUCGC- -5'
30203 5' -60 NC_006273.1 + 167173 0.66 0.821557
Target:  5'- --uUGGuGGCCACggcggGCGCAgCGGCcGCGg -3'
miRNA:   3'- gacACC-UCGGUG-----UGCGUgGCCGuCGC- -5'
30203 5' -60 NC_006273.1 + 131341 0.66 0.821557
Target:  5'- ---aGGAGcCCGCuuGCACCGuCAGCa -3'
miRNA:   3'- gacaCCUC-GGUGugCGUGGCcGUCGc -5'
30203 5' -60 NC_006273.1 + 197141 0.66 0.845212
Target:  5'- ---gGGAccguGCCGCGCGCcauGCUGGUGGUGg -3'
miRNA:   3'- gacaCCU----CGGUGUGCG---UGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 68805 0.66 0.829606
Target:  5'- --cUGGAaCCcggACGCGUAgCCGGCGGCGc -3'
miRNA:   3'- gacACCUcGG---UGUGCGU-GGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 73742 0.66 0.820744
Target:  5'- -gGUGGcggcggcGGCCG-AgGC-CCGGCAGCGg -3'
miRNA:   3'- gaCACC-------UCGGUgUgCGuGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 35495 0.66 0.828809
Target:  5'- -cGUGGAGCugaCAUACGCGCagcagauUGGC-GCGg -3'
miRNA:   3'- gaCACCUCG---GUGUGCGUG-------GCCGuCGC- -5'
30203 5' -60 NC_006273.1 + 77301 0.66 0.837494
Target:  5'- -------uCCACuCGCACCGGCAGCa -3'
miRNA:   3'- gacaccucGGUGuGCGUGGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 68390 0.66 0.845212
Target:  5'- cCUGUGGAcugaucugGUCACGCGCcACaaaauGaGCGGCGg -3'
miRNA:   3'- -GACACCU--------CGGUGUGCG-UGg----C-CGUCGC- -5'
30203 5' -60 NC_006273.1 + 120225 0.66 0.821557
Target:  5'- -gGUGauGAGCCGaa-GCACCuGGCAGUGc -3'
miRNA:   3'- gaCAC--CUCGGUgugCGUGG-CCGUCGC- -5'
30203 5' -60 NC_006273.1 + 167349 0.66 0.821557
Target:  5'- gCUGgccGAGcCCACACcUGCCGGCAGUc -3'
miRNA:   3'- -GACac-CUC-GGUGUGcGUGGCCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.