miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30203 5' -60 NC_006273.1 + 194800 1.07 0.002517
Target:  5'- gCUGUGGAGCCACACGCACCGGCAGCGc -3'
miRNA:   3'- -GACACCUCGGUGUGCGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 234738 1.07 0.002517
Target:  5'- gCUGUGGAGCCACACGCACCGGCAGCGc -3'
miRNA:   3'- -GACACCUCGGUGUGCGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 88584 0.75 0.360932
Target:  5'- -aGUGGcGGCCAUggGCGCCGGCAcgccuGCGg -3'
miRNA:   3'- gaCACC-UCGGUGugCGUGGCCGU-----CGC- -5'
30203 5' -60 NC_006273.1 + 197401 0.74 0.416515
Target:  5'- gCUGUGG-GCgCGCGagcCGCACgGGCAGUGg -3'
miRNA:   3'- -GACACCuCG-GUGU---GCGUGgCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 117530 0.73 0.433331
Target:  5'- --uUGGGGCCAguCGC-UCGGCAGCGc -3'
miRNA:   3'- gacACCUCGGUguGCGuGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 177514 0.73 0.433331
Target:  5'- gUGUGGcGCCA-GCGaACCGGCGGCGu -3'
miRNA:   3'- gACACCuCGGUgUGCgUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 71875 0.72 0.522789
Target:  5'- -aGUGGAGUCGCagguGCGUGCCGcGCAGgGc -3'
miRNA:   3'- gaCACCUCGGUG----UGCGUGGC-CGUCgC- -5'
30203 5' -60 NC_006273.1 + 144555 0.71 0.532151
Target:  5'- uUGUGGAGgCGCgagggcucuACGUGCCGGCcguaAGCGa -3'
miRNA:   3'- gACACCUCgGUG---------UGCGUGGCCG----UCGC- -5'
30203 5' -60 NC_006273.1 + 148902 0.71 0.551049
Target:  5'- -cGUGGaAGUCAgCAgcaGCACCGGCGGUGc -3'
miRNA:   3'- gaCACC-UCGGU-GUg--CGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 174113 0.71 0.551049
Target:  5'- ---cGGccucGGCCGCGCGCGCCGcgcuGCAGUGg -3'
miRNA:   3'- gacaCC----UCGGUGUGCGUGGC----CGUCGC- -5'
30203 5' -60 NC_006273.1 + 149683 0.71 0.560575
Target:  5'- -gGUGGcuGUUGCuGCGCGCCGGUGGCGa -3'
miRNA:   3'- gaCACCu-CGGUG-UGCGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 196980 0.71 0.560575
Target:  5'- gCUGuUGccGCCAC-CGCAgCGGCGGCGa -3'
miRNA:   3'- -GAC-ACcuCGGUGuGCGUgGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 209263 0.71 0.560575
Target:  5'- aUGUcGGGaCCGCAgCGC-CCGGCGGCGu -3'
miRNA:   3'- gACAcCUC-GGUGU-GCGuGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 214987 0.71 0.579757
Target:  5'- --cUGGGGCgACGCcgcuGCugUGGCAGCGa -3'
miRNA:   3'- gacACCUCGgUGUG----CGugGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 30678 0.7 0.589402
Target:  5'- cCUGcGGccGGCCGCG-GUGCCGGCGGCu -3'
miRNA:   3'- -GACaCC--UCGGUGUgCGUGGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 31776 0.7 0.599074
Target:  5'- -aGUGGGGCCgucuGCACGCcCCGG-AGUGc -3'
miRNA:   3'- gaCACCUCGG----UGUGCGuGGCCgUCGC- -5'
30203 5' -60 NC_006273.1 + 33216 0.7 0.608769
Target:  5'- aUGUGG-GCCcgguaGCGCACCgagggccccggGGCGGCGa -3'
miRNA:   3'- gACACCuCGGug---UGCGUGG-----------CCGUCGC- -5'
30203 5' -60 NC_006273.1 + 142330 0.7 0.608769
Target:  5'- -cGUGGAGCUGCGCGCGgaaagucaGGaCAGCGc -3'
miRNA:   3'- gaCACCUCGGUGUGCGUgg------CC-GUCGC- -5'
30203 5' -60 NC_006273.1 + 67979 0.7 0.618479
Target:  5'- aCUGUGGAagucugucuggGCgACGCucuGC-CCGGCGGCGu -3'
miRNA:   3'- -GACACCU-----------CGgUGUG---CGuGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 62917 0.7 0.618479
Target:  5'- aUGUGuacAGCCcCACGUuccuguucgaccACCGGCGGCGg -3'
miRNA:   3'- gACACc--UCGGuGUGCG------------UGGCCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.