miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30203 5' -60 NC_006273.1 + 145078 0.66 0.837494
Target:  5'- ---cGcGGGCgACGC-CGCUGGCGGCGg -3'
miRNA:   3'- gacaC-CUCGgUGUGcGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 77301 0.66 0.837494
Target:  5'- -------uCCACuCGCACCGGCAGCa -3'
miRNA:   3'- gacaccucGGUGuGCGUGGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 72694 0.66 0.837494
Target:  5'- -gGUGGGGUgAa--GCACgGGCAGCc -3'
miRNA:   3'- gaCACCUCGgUgugCGUGgCCGUCGc -5'
30203 5' -60 NC_006273.1 + 50307 0.66 0.836712
Target:  5'- aUGUGG-GCCGagaacuaugagacCACGuCGCCGGCGcCGg -3'
miRNA:   3'- gACACCuCGGU-------------GUGC-GUGGCCGUcGC- -5'
30203 5' -60 NC_006273.1 + 71963 0.66 0.835145
Target:  5'- gCUGgGGGGCCaACGCcggcuguggagacaGCugCGGCGGUc -3'
miRNA:   3'- -GACaCCUCGG-UGUG--------------CGugGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 18989 0.66 0.829606
Target:  5'- --cUGGGGCCGCACGgACCuacugcccacgGGC-GCGc -3'
miRNA:   3'- gacACCUCGGUGUGCgUGG-----------CCGuCGC- -5'
30203 5' -60 NC_006273.1 + 156322 0.66 0.829606
Target:  5'- -cGUGGccugacGCCGCAgGCuCUGGUGGCGc -3'
miRNA:   3'- gaCACCu-----CGGUGUgCGuGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 85630 0.66 0.829606
Target:  5'- ---cGGAcacGCuCACGCGCucccguaacagcGCCGGCAGCc -3'
miRNA:   3'- gacaCCU---CG-GUGUGCG------------UGGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 117858 0.66 0.829606
Target:  5'- -cGUGGucAGUCGCAgaagcaGCACCgucacgggGGCAGCGg -3'
miRNA:   3'- gaCACC--UCGGUGUg-----CGUGG--------CCGUCGC- -5'
30203 5' -60 NC_006273.1 + 69591 0.66 0.829606
Target:  5'- ----aGAGCCACACGCACCccGCGGa- -3'
miRNA:   3'- gacacCUCGGUGUGCGUGGc-CGUCgc -5'
30203 5' -60 NC_006273.1 + 188911 0.66 0.829606
Target:  5'- ---aGG-GCCugGgCGuCACCGGCGGUGu -3'
miRNA:   3'- gacaCCuCGGugU-GC-GUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 68805 0.66 0.829606
Target:  5'- --cUGGAaCCcggACGCGUAgCCGGCGGCGc -3'
miRNA:   3'- gacACCUcGG---UGUGCGU-GGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 35495 0.66 0.828809
Target:  5'- -cGUGGAGCugaCAUACGCGCagcagauUGGC-GCGg -3'
miRNA:   3'- gaCACCUCG---GUGUGCGUG-------GCCGuCGC- -5'
30203 5' -60 NC_006273.1 + 1971 0.66 0.828809
Target:  5'- ---cGGGGCCggcgacggggacgACGuCGCGCCaGCGGCGa -3'
miRNA:   3'- gacaCCUCGG-------------UGU-GCGUGGcCGUCGC- -5'
30203 5' -60 NC_006273.1 + 110606 0.66 0.821557
Target:  5'- gCUGcccUGGAucguacccauGCCACugGCGCUGGaaaucaacCAGCGa -3'
miRNA:   3'- -GAC---ACCU----------CGGUGugCGUGGCC--------GUCGC- -5'
30203 5' -60 NC_006273.1 + 71766 0.66 0.821557
Target:  5'- -aGUGGAGCCGaagaagACGaggaagaguUACUGGCAGCc -3'
miRNA:   3'- gaCACCUCGGUg-----UGC---------GUGGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 120225 0.66 0.821557
Target:  5'- -gGUGauGAGCCGaa-GCACCuGGCAGUGc -3'
miRNA:   3'- gaCAC--CUCGGUgugCGUGG-CCGUCGC- -5'
30203 5' -60 NC_006273.1 + 167173 0.66 0.821557
Target:  5'- --uUGGuGGCCACggcggGCGCAgCGGCcGCGg -3'
miRNA:   3'- gacACC-UCGGUG-----UGCGUgGCCGuCGC- -5'
30203 5' -60 NC_006273.1 + 28566 0.66 0.821557
Target:  5'- -cGUGGAugUGCAUGCAgCCGGcCAGCGc -3'
miRNA:   3'- gaCACCUcgGUGUGCGU-GGCC-GUCGC- -5'
30203 5' -60 NC_006273.1 + 131341 0.66 0.821557
Target:  5'- ---aGGAGcCCGCuuGCACCGuCAGCa -3'
miRNA:   3'- gacaCCUC-GGUGugCGUGGCcGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.