miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30203 5' -60 NC_006273.1 + 1 0.66 0.852756
Target:  5'- ------AGCCcuguCcCGCACCGGCGGCGg -3'
miRNA:   3'- gacaccUCGGu---GuGCGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 1734 0.66 0.837494
Target:  5'- ---gGGAGCU----GCGCCGGCGGUGg -3'
miRNA:   3'- gacaCCUCGGugugCGUGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 1971 0.66 0.828809
Target:  5'- ---cGGGGCCggcgacggggacgACGuCGCGCCaGCGGCGa -3'
miRNA:   3'- gacaCCUCGG-------------UGU-GCGUGGcCGUCGC- -5'
30203 5' -60 NC_006273.1 + 2151 0.66 0.845212
Target:  5'- -gGUGGucgGGgCGgACGCGaCGGCGGCGg -3'
miRNA:   3'- gaCACC---UCgGUgUGCGUgGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 2248 0.66 0.845212
Target:  5'- ---gGGAccguGCCGCGCGCcauGCUGGUGGUGg -3'
miRNA:   3'- gacaCCU----CGGUGUGCG---UGGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 2508 0.7 0.628199
Target:  5'- gCUGUGG-GCgCGCGagcCGCACgGGCAGUu -3'
miRNA:   3'- -GACACCuCG-GUGU---GCGUGgCCGUCGc -5'
30203 5' -60 NC_006273.1 + 3659 0.68 0.742991
Target:  5'- -gGUGGGGCCAC-UGCgAUCaGCGGCa -3'
miRNA:   3'- gaCACCUCGGUGuGCG-UGGcCGUCGc -5'
30203 5' -60 NC_006273.1 + 4840 0.67 0.770248
Target:  5'- ---cGGAGCCAUGCGgACCaacGCGGCu -3'
miRNA:   3'- gacaCCUCGGUGUGCgUGGc--CGUCGc -5'
30203 5' -60 NC_006273.1 + 8084 0.7 0.628199
Target:  5'- -aGUGGAcggcgauaacGCCACGCGuCGCCagaaaaGCAGCGg -3'
miRNA:   3'- gaCACCU----------CGGUGUGC-GUGGc-----CGUCGC- -5'
30203 5' -60 NC_006273.1 + 10229 0.67 0.778239
Target:  5'- --aUGGAcGCCGucuggucCACGCACCgagagacugaGGCAGCGu -3'
miRNA:   3'- gacACCU-CGGU-------GUGCGUGG----------CCGUCGC- -5'
30203 5' -60 NC_006273.1 + 18989 0.66 0.829606
Target:  5'- --cUGGGGCCGCACGgACCuacugcccacgGGC-GCGc -3'
miRNA:   3'- gacACCUCGGUGUGCgUGG-----------CCGuCGC- -5'
30203 5' -60 NC_006273.1 + 20568 0.68 0.746676
Target:  5'- uUGUGGcGUCGCACGUggguuccgggacagaAcCCGGCGGCc -3'
miRNA:   3'- gACACCuCGGUGUGCG---------------U-GGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 22696 0.68 0.723431
Target:  5'- aUGgGGAGCgCGCACaaaggaccgucagGCGCCGGCauggAGCGu -3'
miRNA:   3'- gACaCCUCG-GUGUG-------------CGUGGCCG----UCGC- -5'
30203 5' -60 NC_006273.1 + 28300 0.69 0.68633
Target:  5'- cCUGUGcucugcguuGCCACGCGUACUGGCuggaacgucAGCGc -3'
miRNA:   3'- -GACACcu-------CGGUGUGCGUGGCCG---------UCGC- -5'
30203 5' -60 NC_006273.1 + 28566 0.66 0.821557
Target:  5'- -cGUGGAugUGCAUGCAgCCGGcCAGCGc -3'
miRNA:   3'- gaCACCUcgGUGUGCGU-GGCC-GUCGC- -5'
30203 5' -60 NC_006273.1 + 30678 0.7 0.589402
Target:  5'- cCUGcGGccGGCCGCG-GUGCCGGCGGCu -3'
miRNA:   3'- -GACaCC--UCGGUGUgCGUGGCCGUCGc -5'
30203 5' -60 NC_006273.1 + 31213 0.69 0.667036
Target:  5'- -gGUGGAgGCCAUACGgacCACCGuGCggGGCGa -3'
miRNA:   3'- gaCACCU-CGGUGUGC---GUGGC-CG--UCGC- -5'
30203 5' -60 NC_006273.1 + 31776 0.7 0.599074
Target:  5'- -aGUGGGGCCgucuGCACGCcCCGG-AGUGc -3'
miRNA:   3'- gaCACCUCGG----UGUGCGuGGCCgUCGC- -5'
30203 5' -60 NC_006273.1 + 32738 0.68 0.705462
Target:  5'- gCUGUGuagcaGGCCGCGCuccagcaaCugCGGCAGCGa -3'
miRNA:   3'- -GACACc----UCGGUGUGc-------GugGCCGUCGC- -5'
30203 5' -60 NC_006273.1 + 33020 0.67 0.761263
Target:  5'- ---aGGuGGCgAC-CGCGCUGGCGGCGc -3'
miRNA:   3'- gacaCC-UCGgUGuGCGUGGCCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.