Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30203 | 5' | -60 | NC_006273.1 | + | 187911 | 0.69 | 0.680556 |
Target: 5'- --uUGGAccGCCACAUGUACCgcauccauccauucuGGCAGCa -3' miRNA: 3'- gacACCU--CGGUGUGCGUGG---------------CCGUCGc -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 62917 | 0.7 | 0.618479 |
Target: 5'- aUGUGuacAGCCcCACGUuccuguucgaccACCGGCGGCGg -3' miRNA: 3'- gACACc--UCGGuGUGCG------------UGGCCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 193216 | 0.69 | 0.64764 |
Target: 5'- ---cGGAGCagcuacCGCugGCGgCGGCGGCGu -3' miRNA: 3'- gacaCCUCG------GUGugCGUgGCCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 116956 | 0.69 | 0.656377 |
Target: 5'- -cGUGacGGGCUACgugcacaguggcaGCGCugCGGCAGCa -3' miRNA: 3'- gaCAC--CUCGGUG-------------UGCGugGCCGUCGc -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 31213 | 0.69 | 0.667036 |
Target: 5'- -gGUGGAgGCCAUACGgacCACCGuGCggGGCGa -3' miRNA: 3'- gaCACCU-CGGUGUGC---GUGGC-CG--UCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 122583 | 0.69 | 0.667036 |
Target: 5'- ---gGGAcGCCAguCGCAUgGGCAGCa -3' miRNA: 3'- gacaCCU-CGGUguGCGUGgCCGUCGc -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 160821 | 0.69 | 0.667036 |
Target: 5'- --uUGGGGCgGCAUGCugCGGCGauGCu -3' miRNA: 3'- gacACCUCGgUGUGCGugGCCGU--CGc -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 189029 | 0.69 | 0.676699 |
Target: 5'- cCUGUGcGAcgacaGCCGCGuggugggggccCGgACCGGCGGCGu -3' miRNA: 3'- -GACAC-CU-----CGGUGU-----------GCgUGGCCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 33278 | 0.69 | 0.676699 |
Target: 5'- ---cGGGGCCu--UGCGgCGGCAGCGg -3' miRNA: 3'- gacaCCUCGGuguGCGUgGCCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 33216 | 0.7 | 0.608769 |
Target: 5'- aUGUGG-GCCcgguaGCGCACCgagggccccggGGCGGCGa -3' miRNA: 3'- gACACCuCGGug---UGCGUGG-----------CCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 142330 | 0.7 | 0.608769 |
Target: 5'- -cGUGGAGCUGCGCGCGgaaagucaGGaCAGCGc -3' miRNA: 3'- gaCACCUCGGUGUGCGUgg------CC-GUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 214987 | 0.71 | 0.579757 |
Target: 5'- --cUGGGGCgACGCcgcuGCugUGGCAGCGa -3' miRNA: 3'- gacACCUCGgUGUG----CGugGCCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 88584 | 0.75 | 0.360932 |
Target: 5'- -aGUGGcGGCCAUggGCGCCGGCAcgccuGCGg -3' miRNA: 3'- gaCACC-UCGGUGugCGUGGCCGU-----CGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 197401 | 0.74 | 0.416515 |
Target: 5'- gCUGUGG-GCgCGCGagcCGCACgGGCAGUGg -3' miRNA: 3'- -GACACCuCG-GUGU---GCGUGgCCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 117530 | 0.73 | 0.433331 |
Target: 5'- --uUGGGGCCAguCGC-UCGGCAGCGc -3' miRNA: 3'- gacACCUCGGUguGCGuGGCCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 177514 | 0.73 | 0.433331 |
Target: 5'- gUGUGGcGCCA-GCGaACCGGCGGCGu -3' miRNA: 3'- gACACCuCGGUgUGCgUGGCCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 71875 | 0.72 | 0.522789 |
Target: 5'- -aGUGGAGUCGCagguGCGUGCCGcGCAGgGc -3' miRNA: 3'- gaCACCUCGGUG----UGCGUGGC-CGUCgC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 148902 | 0.71 | 0.551049 |
Target: 5'- -cGUGGaAGUCAgCAgcaGCACCGGCGGUGc -3' miRNA: 3'- gaCACC-UCGGU-GUg--CGUGGCCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 209263 | 0.71 | 0.560575 |
Target: 5'- aUGUcGGGaCCGCAgCGC-CCGGCGGCGu -3' miRNA: 3'- gACAcCUC-GGUGU-GCGuGGCCGUCGC- -5' |
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30203 | 5' | -60 | NC_006273.1 | + | 149683 | 0.71 | 0.560575 |
Target: 5'- -gGUGGcuGUUGCuGCGCGCCGGUGGCGa -3' miRNA: 3'- gaCACCu-CGGUG-UGCGUGGCCGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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