miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30204 3' -51.1 NC_006273.1 + 176748 0.66 0.998798
Target:  5'- gUCAGAUcuuugGGACuCAuGACGCGCGguuuucaaaauuccCUGCg -3'
miRNA:   3'- -AGUUUG-----UCUGuGU-CUGCGCGCa-------------GACG- -5'
30204 3' -51.1 NC_006273.1 + 188168 0.66 0.998705
Target:  5'- cCGGGuCGGGCACAuccauGGCuCGCcGUCUGCu -3'
miRNA:   3'- aGUUU-GUCUGUGU-----CUGcGCG-CAGACG- -5'
30204 3' -51.1 NC_006273.1 + 173971 0.66 0.998705
Target:  5'- -----gAGGCGCAGcCGgGCGcgCUGCu -3'
miRNA:   3'- aguuugUCUGUGUCuGCgCGCa-GACG- -5'
30204 3' -51.1 NC_006273.1 + 1606 0.66 0.998705
Target:  5'- ---cGCGGGCGaGGugGUGCGgCUGUa -3'
miRNA:   3'- aguuUGUCUGUgUCugCGCGCaGACG- -5'
30204 3' -51.1 NC_006273.1 + 78683 0.66 0.998705
Target:  5'- cUCAAcacgcacacgguGCAGGUACAGAuCGuCGCGggcCUGCa -3'
miRNA:   3'- -AGUU------------UGUCUGUGUCU-GC-GCGCa--GACG- -5'
30204 3' -51.1 NC_006273.1 + 196499 0.66 0.998705
Target:  5'- ---cGCGGGCGaGGugGUGCGgCUGUa -3'
miRNA:   3'- aguuUGUCUGUgUCugCGCGCaGACG- -5'
30204 3' -51.1 NC_006273.1 + 188460 0.66 0.998444
Target:  5'- -uGGugAGGCGCGGAUaGCGCGcCUcgGCc -3'
miRNA:   3'- agUUugUCUGUGUCUG-CGCGCaGA--CG- -5'
30204 3' -51.1 NC_006273.1 + 141266 0.66 0.998444
Target:  5'- gCAGGCuuuGACGguGAUGCGUGUg-GCc -3'
miRNA:   3'- aGUUUGu--CUGUguCUGCGCGCAgaCG- -5'
30204 3' -51.1 NC_006273.1 + 38005 0.66 0.998444
Target:  5'- ---cACAG-CGCGG-CGCGCGggUGCa -3'
miRNA:   3'- aguuUGUCuGUGUCuGCGCGCagACG- -5'
30204 3' -51.1 NC_006273.1 + 13999 0.66 0.998444
Target:  5'- aUAAACuGGgGCGGGCGCGgGgugGCg -3'
miRNA:   3'- aGUUUGuCUgUGUCUGCGCgCagaCG- -5'
30204 3' -51.1 NC_006273.1 + 199676 0.66 0.998444
Target:  5'- gUCuc-CGGGCACGGGCaCGCcUUUGCg -3'
miRNA:   3'- -AGuuuGUCUGUGUCUGcGCGcAGACG- -5'
30204 3' -51.1 NC_006273.1 + 129375 0.66 0.998444
Target:  5'- cUCGAACAucuccucgccGGCGCuggucuuGACGUGCGUCa-- -3'
miRNA:   3'- -AGUUUGU----------CUGUGu------CUGCGCGCAGacg -5'
30204 3' -51.1 NC_006273.1 + 232898 0.66 0.998444
Target:  5'- ---cACAG-CGCGG-CGCGCGggUGCa -3'
miRNA:   3'- aguuUGUCuGUGUCuGCGCGCagACG- -5'
30204 3' -51.1 NC_006273.1 + 64020 0.66 0.998444
Target:  5'- cUCGAGCcaccauGGGCGCggcgguuuuGGugGCGCGgccuccuccucUCUGCu -3'
miRNA:   3'- -AGUUUG------UCUGUG---------UCugCGCGC-----------AGACG- -5'
30204 3' -51.1 NC_006273.1 + 131534 0.66 0.998268
Target:  5'- aCAcGCAGAUcaacgcguuccgcgaACG--UGCGCGUCUGCc -3'
miRNA:   3'- aGUuUGUCUG---------------UGUcuGCGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 92144 0.66 0.998142
Target:  5'- gCGuGCGGGuCGCAGAUGagcaGCuUCUGCa -3'
miRNA:   3'- aGUuUGUCU-GUGUCUGCg---CGcAGACG- -5'
30204 3' -51.1 NC_006273.1 + 154939 0.66 0.998142
Target:  5'- cCGAGgAGAUguugcgugaGCuGGCGCGCGUugagCUGCc -3'
miRNA:   3'- aGUUUgUCUG---------UGuCUGCGCGCA----GACG- -5'
30204 3' -51.1 NC_006273.1 + 198658 0.66 0.998142
Target:  5'- -uGAGCuccGACGCAgGAUGCGCGUacucaacgUGCg -3'
miRNA:   3'- agUUUGu--CUGUGU-CUGCGCGCAg-------ACG- -5'
30204 3' -51.1 NC_006273.1 + 126842 0.66 0.998142
Target:  5'- uUCAcGACAGGCcuGCAGcagcggcguAUGUGCGUCggugGCg -3'
miRNA:   3'- -AGU-UUGUCUG--UGUC---------UGCGCGCAGa---CG- -5'
30204 3' -51.1 NC_006273.1 + 124429 0.66 0.998007
Target:  5'- aCGugcuGCGGccGCGCGGGCGUGCGcggcucgccgacgCUGCg -3'
miRNA:   3'- aGUu---UGUC--UGUGUCUGCGCGCa------------GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.