miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30204 3' -51.1 NC_006273.1 + 195282 1.13 0.007962
Target:  5'- cUCAAACAGACACAGACGCGCGUCUGCu -3'
miRNA:   3'- -AGUUUGUCUGUGUCUGCGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 389 1.13 0.007962
Target:  5'- cUCAAACAGACACAGACGCGCGUCUGCu -3'
miRNA:   3'- -AGUUUGUCUGUGUCUGCGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 235220 1.13 0.007962
Target:  5'- cUCAAACAGACACAGACGCGCGUCUGCu -3'
miRNA:   3'- -AGUUUGUCUGUGUCUGCGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 158219 0.84 0.391363
Target:  5'- gCAgcGugAGGCGCGGGCGCGCGUCgGCc -3'
miRNA:   3'- aGU--UugUCUGUGUCUGCGCGCAGaCG- -5'
30204 3' -51.1 NC_006273.1 + 40087 0.8 0.569856
Target:  5'- gCGcGCAcGGCgaaaaGCAGACGCGCGUCUGUg -3'
miRNA:   3'- aGUuUGU-CUG-----UGUCUGCGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 234980 0.8 0.569856
Target:  5'- gCGcGCAcGGCgaaaaGCAGACGCGCGUCUGUg -3'
miRNA:   3'- aGUuUGU-CUG-----UGUCUGCGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 149 0.8 0.569856
Target:  5'- gCGcGCAcGGCgaaaaGCAGACGCGCGUCUGUg -3'
miRNA:   3'- aGUuUGU-CUG-----UGUCUGCGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 70481 0.79 0.610633
Target:  5'- cCGAGCuGAaGCAGACGCGCGUCaaccUGCc -3'
miRNA:   3'- aGUUUGuCUgUGUCUGCGCGCAG----ACG- -5'
30204 3' -51.1 NC_006273.1 + 164894 0.79 0.64141
Target:  5'- -uGAGCcGGCAgGuuGACGCGCGUCUGCu -3'
miRNA:   3'- agUUUGuCUGUgU--CUGCGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 192753 0.77 0.722525
Target:  5'- --uGGCAGACGCGGugGCaguuuGCGgUCUGCg -3'
miRNA:   3'- aguUUGUCUGUGUCugCG-----CGC-AGACG- -5'
30204 3' -51.1 NC_006273.1 + 164644 0.76 0.770034
Target:  5'- cUCGGGCGGACACAGAUagcuccaGCGUGUacgUGCu -3'
miRNA:   3'- -AGUUUGUCUGUGUCUG-------CGCGCAg--ACG- -5'
30204 3' -51.1 NC_006273.1 + 93152 0.76 0.780331
Target:  5'- cCAAcgGCGGACGCA-ACGgGCGUUUGCg -3'
miRNA:   3'- aGUU--UGUCUGUGUcUGCgCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 64692 0.75 0.824919
Target:  5'- gCAGACcgaggcgcuGGACGCcaucauggaagaGGGCGCGCGUCUGg -3'
miRNA:   3'- aGUUUG---------UCUGUG------------UCUGCGCGCAGACg -5'
30204 3' -51.1 NC_006273.1 + 167414 0.74 0.857473
Target:  5'- cCAGACAGACuuccacagugGCGGGCGCGC-UCUcgGCg -3'
miRNA:   3'- aGUUUGUCUG----------UGUCUGCGCGcAGA--CG- -5'
30204 3' -51.1 NC_006273.1 + 156283 0.74 0.872549
Target:  5'- gUCAucuACggGGACACGGACaGCGUGUUUGUc -3'
miRNA:   3'- -AGUu--UG--UCUGUGUCUG-CGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 163581 0.74 0.872549
Target:  5'- uUCGcACGGGCACGGccugcuguGCGCGCG-CUGUc -3'
miRNA:   3'- -AGUuUGUCUGUGUC--------UGCGCGCaGACG- -5'
30204 3' -51.1 NC_006273.1 + 44504 0.73 0.886758
Target:  5'- gCGGugAGACACAcGCGCGCacGUCgGCg -3'
miRNA:   3'- aGUUugUCUGUGUcUGCGCG--CAGaCG- -5'
30204 3' -51.1 NC_006273.1 + 72157 0.73 0.893526
Target:  5'- gCGAGgAGGCugAGGCGCcGCGgauucCUGCg -3'
miRNA:   3'- aGUUUgUCUGugUCUGCG-CGCa----GACG- -5'
30204 3' -51.1 NC_006273.1 + 40930 0.73 0.900064
Target:  5'- cUCGGGCGGACGCGuGCG-GCGUC-GCg -3'
miRNA:   3'- -AGUUUGUCUGUGUcUGCgCGCAGaCG- -5'
30204 3' -51.1 NC_006273.1 + 148050 0.73 0.900064
Target:  5'- uUCAGACGGACGCuAGugGCGUGg---- -3'
miRNA:   3'- -AGUUUGUCUGUG-UCugCGCGCagacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.