miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30204 3' -51.1 NC_006273.1 + 159476 0.66 0.997791
Target:  5'- cUCAugaucGCGGAgaccaCACAGACguGCGCGUCUc- -3'
miRNA:   3'- -AGUu----UGUCU-----GUGUCUG--CGCGCAGAcg -5'
30204 3' -51.1 NC_006273.1 + 28691 0.66 0.997791
Target:  5'- gUCAAAUugcuACACGGACG-GCGaccugCUGCg -3'
miRNA:   3'- -AGUUUGuc--UGUGUCUGCgCGCa----GACG- -5'
30204 3' -51.1 NC_006273.1 + 94054 0.66 0.997791
Target:  5'- gUAAAUuucCACuGGAUGCGCGUCgUGCg -3'
miRNA:   3'- aGUUUGucuGUG-UCUGCGCGCAG-ACG- -5'
30204 3' -51.1 NC_006273.1 + 110862 0.66 0.997791
Target:  5'- gUCAAugGGcggugGCACAGugGUGgG-CUGUu -3'
miRNA:   3'- -AGUUugUC-----UGUGUCugCGCgCaGACG- -5'
30204 3' -51.1 NC_006273.1 + 133971 0.66 0.997791
Target:  5'- -aGAAgAGcACGCGGAUGaGCGUgCUGCu -3'
miRNA:   3'- agUUUgUC-UGUGUCUGCgCGCA-GACG- -5'
30204 3' -51.1 NC_006273.1 + 161072 0.66 0.997791
Target:  5'- -aAGACAGACACGGucuauUGUGuCGaauaUCUGCu -3'
miRNA:   3'- agUUUGUCUGUGUCu----GCGC-GC----AGACG- -5'
30204 3' -51.1 NC_006273.1 + 98542 0.66 0.997791
Target:  5'- ---cACAGcACACGGAgGCGCacgcgaugCUGCa -3'
miRNA:   3'- aguuUGUC-UGUGUCUgCGCGca------GACG- -5'
30204 3' -51.1 NC_006273.1 + 195830 0.66 0.997791
Target:  5'- gCAggUAGAaggaaaAGGCGCGCGgcaugUUGCg -3'
miRNA:   3'- aGUuuGUCUgug---UCUGCGCGCa----GACG- -5'
30204 3' -51.1 NC_006273.1 + 97355 0.66 0.997791
Target:  5'- gCAAcCAGGCGCcGGCGCcgccuaGCGUCacUGCc -3'
miRNA:   3'- aGUUuGUCUGUGuCUGCG------CGCAG--ACG- -5'
30204 3' -51.1 NC_006273.1 + 33059 0.66 0.997386
Target:  5'- uUCAAACcGcCGuCGGGUGCGCGcCUGCu -3'
miRNA:   3'- -AGUUUGuCuGU-GUCUGCGCGCaGACG- -5'
30204 3' -51.1 NC_006273.1 + 192800 0.66 0.997386
Target:  5'- cCGAGCAaGCGCAcuugcGGCGCGUGaUCgGCa -3'
miRNA:   3'- aGUUUGUcUGUGU-----CUGCGCGC-AGaCG- -5'
30204 3' -51.1 NC_006273.1 + 87489 0.66 0.997386
Target:  5'- cUCAGGCggcccGGGCGCcGACGCGaaugucggaGUUUGCc -3'
miRNA:   3'- -AGUUUG-----UCUGUGuCUGCGCg--------CAGACG- -5'
30204 3' -51.1 NC_006273.1 + 162906 0.66 0.997386
Target:  5'- aCAAGCGG-UGCAGACGUuuugcgacacGUGUCcGCg -3'
miRNA:   3'- aGUUUGUCuGUGUCUGCG----------CGCAGaCG- -5'
30204 3' -51.1 NC_006273.1 + 209857 0.66 0.997342
Target:  5'- cUCcGugAGACACAGACGgGaauggugaaaccaCGUCgcggGCg -3'
miRNA:   3'- -AGuUugUCUGUGUCUGCgC-------------GCAGa---CG- -5'
30204 3' -51.1 NC_006273.1 + 141749 0.67 0.996921
Target:  5'- gCGcGCcGGCGCcaguGGAUGCGCGaagCUGCg -3'
miRNA:   3'- aGUuUGuCUGUG----UCUGCGCGCa--GACG- -5'
30204 3' -51.1 NC_006273.1 + 31766 0.67 0.996921
Target:  5'- ---cGCGGACgaaAGugGgGCcGUCUGCa -3'
miRNA:   3'- aguuUGUCUGug-UCugCgCG-CAGACG- -5'
30204 3' -51.1 NC_006273.1 + 100419 0.67 0.996921
Target:  5'- gUCGcGACGacGACACuuucguuuuuauGGGCGCGCGUCacGCg -3'
miRNA:   3'- -AGU-UUGU--CUGUG------------UCUGCGCGCAGa-CG- -5'
30204 3' -51.1 NC_006273.1 + 109815 0.67 0.996921
Target:  5'- --cGGC-GACACGGACaCGCaguacGUCUGCg -3'
miRNA:   3'- aguUUGuCUGUGUCUGcGCG-----CAGACG- -5'
30204 3' -51.1 NC_006273.1 + 127403 0.67 0.996921
Target:  5'- --cGGCAGcGCugAGAUGCGCGUUa-- -3'
miRNA:   3'- aguUUGUC-UGugUCUGCGCGCAGacg -5'
30204 3' -51.1 NC_006273.1 + 81423 0.67 0.996921
Target:  5'- gCGAACcGACGCAGAugaugcagggcaCGCgGCGUUcGCg -3'
miRNA:   3'- aGUUUGuCUGUGUCU------------GCG-CGCAGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.