miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30204 3' -51.1 NC_006273.1 + 149 0.8 0.569856
Target:  5'- gCGcGCAcGGCgaaaaGCAGACGCGCGUCUGUg -3'
miRNA:   3'- aGUuUGU-CUG-----UGUCUGCGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 242 0.68 0.991857
Target:  5'- cCAGACaAGACGCGGGCGCaagggaggagucGCGggccccggggcacaCUGCa -3'
miRNA:   3'- aGUUUG-UCUGUGUCUGCG------------CGCa-------------GACG- -5'
30204 3' -51.1 NC_006273.1 + 389 1.13 0.007962
Target:  5'- cUCAAACAGACACAGACGCGCGUCUGCu -3'
miRNA:   3'- -AGUUUGUCUGUGUCUGCGCGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 821 0.71 0.960008
Target:  5'- gUAAACGGcgugguCGCuGACGCGgGUUUGCu -3'
miRNA:   3'- aGUUUGUCu-----GUGuCUGCGCgCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 1006 0.67 0.995786
Target:  5'- gUCAAcaGCGGGCACuGGUGCGaGUgCUGCg -3'
miRNA:   3'- -AGUU--UGUCUGUGuCUGCGCgCA-GACG- -5'
30204 3' -51.1 NC_006273.1 + 1606 0.66 0.998705
Target:  5'- ---cGCGGGCGaGGugGUGCGgCUGUa -3'
miRNA:   3'- aguuUGUCUGUgUCugCGCGCaGACG- -5'
30204 3' -51.1 NC_006273.1 + 1825 0.67 0.995721
Target:  5'- -gGAGCuGGCGCAGuACGagccguuCGCGUCgGCg -3'
miRNA:   3'- agUUUGuCUGUGUC-UGC-------GCGCAGaCG- -5'
30204 3' -51.1 NC_006273.1 + 2453 0.7 0.966436
Target:  5'- gCGAGCAGugggagcggccgcGCugGGACGCGCugcacCUGCa -3'
miRNA:   3'- aGUUUGUC-------------UGugUCUGCGCGca---GACG- -5'
30204 3' -51.1 NC_006273.1 + 6742 0.68 0.988881
Target:  5'- aCAGGCGGAaaCACAGACGaauacuCGgGgggCUGCg -3'
miRNA:   3'- aGUUUGUCU--GUGUCUGC------GCgCa--GACG- -5'
30204 3' -51.1 NC_006273.1 + 12406 0.69 0.987416
Target:  5'- gCGAGCAGAUGCGcACGC-CG-CUGCu -3'
miRNA:   3'- aGUUUGUCUGUGUcUGCGcGCaGACG- -5'
30204 3' -51.1 NC_006273.1 + 13999 0.66 0.998444
Target:  5'- aUAAACuGGgGCGGGCGCGgGgugGCg -3'
miRNA:   3'- aGUUUGuCUgUGUCUGCGCgCagaCG- -5'
30204 3' -51.1 NC_006273.1 + 15643 0.68 0.99021
Target:  5'- aUCAGGacGAUACGGGCcCGCGgCUGCa -3'
miRNA:   3'- -AGUUUguCUGUGUCUGcGCGCaGACG- -5'
30204 3' -51.1 NC_006273.1 + 16383 0.71 0.952374
Target:  5'- cCGu-CAGcCACAGACGC-CGUUUGCu -3'
miRNA:   3'- aGUuuGUCuGUGUCUGCGcGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 16906 0.69 0.980884
Target:  5'- --uGACAGACACGGAacUGUgacagugaugucuaaGCGUUUGCa -3'
miRNA:   3'- aguUUGUCUGUGUCU--GCG---------------CGCAGACG- -5'
30204 3' -51.1 NC_006273.1 + 18185 0.73 0.906368
Target:  5'- cCAAGCAGGCGCAGGaacugcccUGCGUGcUCaUGCu -3'
miRNA:   3'- aGUUUGUCUGUGUCU--------GCGCGC-AG-ACG- -5'
30204 3' -51.1 NC_006273.1 + 20541 0.72 0.943365
Target:  5'- cCAuGCAGGCGCAGgaggcuaACGCGCuG-CUGCu -3'
miRNA:   3'- aGUuUGUCUGUGUC-------UGCGCG-CaGACG- -5'
30204 3' -51.1 NC_006273.1 + 28691 0.66 0.997791
Target:  5'- gUCAAAUugcuACACGGACG-GCGaccugCUGCg -3'
miRNA:   3'- -AGUUUGuc--UGUGUCUGCgCGCa----GACG- -5'
30204 3' -51.1 NC_006273.1 + 30659 0.7 0.977755
Target:  5'- gCAAccGCAGAUcgcaGCGGGCGCGCcUCgggGCu -3'
miRNA:   3'- aGUU--UGUCUG----UGUCUGCGCGcAGa--CG- -5'
30204 3' -51.1 NC_006273.1 + 31766 0.67 0.996921
Target:  5'- ---cGCGGACgaaAGugGgGCcGUCUGCa -3'
miRNA:   3'- aguuUGUCUGug-UCugCgCG-CAGACG- -5'
30204 3' -51.1 NC_006273.1 + 33059 0.66 0.997386
Target:  5'- uUCAAACcGcCGuCGGGUGCGCGcCUGCu -3'
miRNA:   3'- -AGUUUGuCuGU-GUCUGCGCGCaGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.