Results 1 - 20 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30204 | 3' | -51.1 | NC_006273.1 | + | 195713 | 0.71 | 0.960008 |
Target: 5'- gUAAACGGcgugguCGCuGACGCGgGUUUGCu -3' miRNA: 3'- aGUUUGUCu-----GUGuCUGCGCgCAGACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 104487 | 0.72 | 0.929207 |
Target: 5'- gCAGGgggaAGACGCAGugGUccgucgGUGUCUGCg -3' miRNA: 3'- aGUUUg---UCUGUGUCugCG------CGCAGACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 165065 | 0.72 | 0.929207 |
Target: 5'- aCGGGCAGACGCAcGGCGCG-GUUgguacGCg -3' miRNA: 3'- aGUUUGUCUGUGU-CUGCGCgCAGa----CG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 81274 | 0.72 | 0.939186 |
Target: 5'- --uGACAGACACGG-CGUaugGCGUCcGCg -3' miRNA: 3'- aguUUGUCUGUGUCuGCG---CGCAGaCG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 133480 | 0.72 | 0.939186 |
Target: 5'- gCGuGCAGGCGCGGACGCugGCGgcgGCc -3' miRNA: 3'- aGUuUGUCUGUGUCUGCG--CGCagaCG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 103834 | 0.72 | 0.939186 |
Target: 5'- gUCGGGCAGACgcgcacguucGCGGaACGCGUugaUCUGCg -3' miRNA: 3'- -AGUUUGUCUG----------UGUC-UGCGCGc--AGACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 150656 | 0.72 | 0.943818 |
Target: 5'- cCAGcuGCAGGCAgGuAUGcCGCGUCUGCu -3' miRNA: 3'- aGUU--UGUCUGUgUcUGC-GCGCAGACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 104254 | 0.71 | 0.956304 |
Target: 5'- uUCGGGCgAGAgCACGGGCGUGCGgaagagaUGCc -3' miRNA: 3'- -AGUUUG-UCU-GUGUCUGCGCGCag-----ACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 64079 | 0.71 | 0.960008 |
Target: 5'- cUCGAGCAGGCGCAacguuccaauGGCGC-CGUCguuaccGCg -3' miRNA: 3'- -AGUUUGUCUGUGU----------CUGCGcGCAGa-----CG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 220041 | 0.72 | 0.928683 |
Target: 5'- ---uGCGGGCACAGAUGacgguguuccauaCGCGUCUGa -3' miRNA: 3'- aguuUGUCUGUGUCUGC-------------GCGCAGACg -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 142817 | 0.73 | 0.906368 |
Target: 5'- -----uGGGCACGGGCGUGCaccgcgGUCUGCu -3' miRNA: 3'- aguuugUCUGUGUCUGCGCG------CAGACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 40930 | 0.73 | 0.900064 |
Target: 5'- cUCGGGCGGACGCGuGCG-GCGUC-GCg -3' miRNA: 3'- -AGUUUGUCUGUGUcUGCgCGCAGaCG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 149 | 0.8 | 0.569856 |
Target: 5'- gCGcGCAcGGCgaaaaGCAGACGCGCGUCUGUg -3' miRNA: 3'- aGUuUGU-CUG-----UGUCUGCGCGCAGACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 234980 | 0.8 | 0.569856 |
Target: 5'- gCGcGCAcGGCgaaaaGCAGACGCGCGUCUGUg -3' miRNA: 3'- aGUuUGU-CUG-----UGUCUGCGCGCAGACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 164894 | 0.79 | 0.64141 |
Target: 5'- -uGAGCcGGCAgGuuGACGCGCGUCUGCu -3' miRNA: 3'- agUUUGuCUGUgU--CUGCGCGCAGACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 192753 | 0.77 | 0.722525 |
Target: 5'- --uGGCAGACGCGGugGCaguuuGCGgUCUGCg -3' miRNA: 3'- aguUUGUCUGUGUCugCG-----CGC-AGACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 164644 | 0.76 | 0.770034 |
Target: 5'- cUCGGGCGGACACAGAUagcuccaGCGUGUacgUGCu -3' miRNA: 3'- -AGUUUGUCUGUGUCUG-------CGCGCAg--ACG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 64692 | 0.75 | 0.824919 |
Target: 5'- gCAGACcgaggcgcuGGACGCcaucauggaagaGGGCGCGCGUCUGg -3' miRNA: 3'- aGUUUG---------UCUGUG------------UCUGCGCGCAGACg -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 167414 | 0.74 | 0.857473 |
Target: 5'- cCAGACAGACuuccacagugGCGGGCGCGC-UCUcgGCg -3' miRNA: 3'- aGUUUGUCUG----------UGUCUGCGCGcAGA--CG- -5' |
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30204 | 3' | -51.1 | NC_006273.1 | + | 148050 | 0.73 | 0.900064 |
Target: 5'- uUCAGACGGACGCuAGugGCGUGg---- -3' miRNA: 3'- -AGUUUGUCUGUG-UCugCGCGCagacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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