miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30204 5' -51.1 NC_006273.1 + 218459 0.66 0.99874
Target:  5'- aCGCGCCGC-C-UCGCccaugUGUaCGCa -3'
miRNA:   3'- cGCGCGGCGuGcAGCGaaa--AUAaGCG- -5'
30204 5' -51.1 NC_006273.1 + 136849 0.66 0.998935
Target:  5'- cGUGCGCCuccgugugcugugGUACGUCaauucCUUUUGgcgcagUCGCg -3'
miRNA:   3'- -CGCGCGG-------------CGUGCAGc----GAAAAUa-----AGCG- -5'
30204 5' -51.1 NC_006273.1 + 109441 0.66 0.997852
Target:  5'- uGUGUGUgguaUGCAUGUUGCgcgucaGUUCGCa -3'
miRNA:   3'- -CGCGCG----GCGUGCAGCGaaaa--UAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 109781 0.66 0.998487
Target:  5'- gGUGUGUa-CAgGUCGCUgaggUAUUCGUg -3'
miRNA:   3'- -CGCGCGgcGUgCAGCGAaa--AUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 194977 0.66 0.998063
Target:  5'- gGUGUGCCGCGggugUGUCGCgggcgugUGCc -3'
miRNA:   3'- -CGCGCGGCGU----GCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 150753 0.66 0.99874
Target:  5'- aGCGCGCUGCAgaucagccgcCGggCGCUgugGUgcaGCa -3'
miRNA:   3'- -CGCGCGGCGU----------GCa-GCGAaaaUAag-CG- -5'
30204 5' -51.1 NC_006273.1 + 128351 0.66 0.99846
Target:  5'- aCGCGCCGCAaGUuuuccauaaucacCGUUUU--UUCGCc -3'
miRNA:   3'- cGCGCGGCGUgCA-------------GCGAAAauAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 20504 0.66 0.999032
Target:  5'- gGUGCGCCGCAgCG--GCUUUgugccgagaccgUCGCc -3'
miRNA:   3'- -CGCGCGGCGU-GCagCGAAAaua---------AGCG- -5'
30204 5' -51.1 NC_006273.1 + 88693 0.66 0.998487
Target:  5'- uGCGCGUgGUucuGCGUCGUUaag---CGCg -3'
miRNA:   3'- -CGCGCGgCG---UGCAGCGAaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 58032 0.66 0.998193
Target:  5'- gGC-CGCCauuucCACGUCGUUUUggaUCGCc -3'
miRNA:   3'- -CGcGCGGc----GUGCAGCGAAAauaAGCG- -5'
30204 5' -51.1 NC_006273.1 + 77028 0.66 0.998873
Target:  5'- uGCGCacGCCGCGCGaacgaCGCUcggccuugCGCu -3'
miRNA:   3'- -CGCG--CGGCGUGCa----GCGAaaauaa--GCG- -5'
30204 5' -51.1 NC_006273.1 + 102837 0.66 0.998955
Target:  5'- gGCGCGCCGgcCGCGUccacgggcaCGCUguuggGUggGCa -3'
miRNA:   3'- -CGCGCGGC--GUGCA---------GCGAaaa--UAagCG- -5'
30204 5' -51.1 NC_006273.1 + 117128 0.66 0.998487
Target:  5'- aGCGCgaGUCGUACGUCaagGCgagcguUUCGCc -3'
miRNA:   3'- -CGCG--CGGCGUGCAG---CGaaaau-AAGCG- -5'
30204 5' -51.1 NC_006273.1 + 31840 0.66 0.998955
Target:  5'- aCGCGUCGUGCGUcagcaggaCGCcUUcAUUUGCa -3'
miRNA:   3'- cGCGCGGCGUGCA--------GCGaAAaUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 89580 0.66 0.998487
Target:  5'- -aGCGCCGaaaagacggcCACaaaGUCGCUUUUGccgugCGCg -3'
miRNA:   3'- cgCGCGGC----------GUG---CAGCGAAAAUaa---GCG- -5'
30204 5' -51.1 NC_006273.1 + 92943 0.66 0.998873
Target:  5'- uGUGCGCacacgCGCACG-CGCgcacacgCGCg -3'
miRNA:   3'- -CGCGCG-----GCGUGCaGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 79396 0.66 0.997852
Target:  5'- -aGCGuuGCACGUUaCUUUgag-CGCc -3'
miRNA:   3'- cgCGCggCGUGCAGcGAAAauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 233394 0.66 0.998316
Target:  5'- cCGUGCCGCucgccgcuggcggcgACGUCGUccccg-UCGCc -3'
miRNA:   3'- cGCGCGGCG---------------UGCAGCGaaaauaAGCG- -5'
30204 5' -51.1 NC_006273.1 + 197145 0.66 0.997852
Target:  5'- cCGUGCCGCGCGccaUGCUggUGguggUGCu -3'
miRNA:   3'- cGCGCGGCGUGCa--GCGAaaAUaa--GCG- -5'
30204 5' -51.1 NC_006273.1 + 233230 0.66 0.998193
Target:  5'- uGC-CGCCGC-CGUCGCguc----CGCc -3'
miRNA:   3'- -CGcGCGGCGuGCAGCGaaaauaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.