miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30204 5' -51.1 NC_006273.1 + 195318 1.14 0.007651
Target:  5'- uGCGCGCCGCACGUCGCUUUUAUUCGCc -3'
miRNA:   3'- -CGCGCGGCGUGCAGCGAAAAUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 425 1.14 0.007651
Target:  5'- uGCGCGCCGCACGUCGCUUUUAUUCGCc -3'
miRNA:   3'- -CGCGCGGCGUGCAGCGAAAAUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 235256 1.14 0.007651
Target:  5'- uGCGCGCCGCACGUCGCUUUUAUUCGCc -3'
miRNA:   3'- -CGCGCGGCGUGCAGCGAAAAUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 101962 0.87 0.296011
Target:  5'- cGCGCGCCGuCGCGUCGCUUgacggccaCGCa -3'
miRNA:   3'- -CGCGCGGC-GUGCAGCGAAaauaa---GCG- -5'
30204 5' -51.1 NC_006273.1 + 38932 0.79 0.665254
Target:  5'- cCGCGUCGCGCGcCGCUaggaucagcgugUUGUUCGCc -3'
miRNA:   3'- cGCGCGGCGUGCaGCGAa-----------AAUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 233825 0.79 0.665254
Target:  5'- cCGCGUCGCGCGcCGCUaggaucagcgugUUGUUCGCc -3'
miRNA:   3'- cGCGCGGCGUGCaGCGAa-----------AAUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 167016 0.78 0.677425
Target:  5'- aGCGuUGCCGCACGaggCGCUg--AUUUGCa -3'
miRNA:   3'- -CGC-GCGGCGUGCa--GCGAaaaUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 191052 0.77 0.746872
Target:  5'- aGCGUGCCaaugGUGCGUCGCagugucaggUGUUCGCa -3'
miRNA:   3'- -CGCGCGG----CGUGCAGCGaaa------AUAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 162793 0.76 0.775318
Target:  5'- aGCG-GCCGCAUGUCGCUgc----CGCu -3'
miRNA:   3'- -CGCgCGGCGUGCAGCGAaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 69258 0.76 0.802619
Target:  5'- uGCGCGaCCGCcuGCGUCGuCUaUgcUUCGCg -3'
miRNA:   3'- -CGCGC-GGCG--UGCAGC-GAaAauAAGCG- -5'
30204 5' -51.1 NC_006273.1 + 220161 0.76 0.802619
Target:  5'- aCGCGCCGCACGUaGUggUUGgggUCGUc -3'
miRNA:   3'- cGCGCGGCGUGCAgCGaaAAUa--AGCG- -5'
30204 5' -51.1 NC_006273.1 + 137352 0.75 0.820068
Target:  5'- uGCGCGCgGCGCGUUGUcc----UCGCa -3'
miRNA:   3'- -CGCGCGgCGUGCAGCGaaaauaAGCG- -5'
30204 5' -51.1 NC_006273.1 + 102496 0.75 0.820068
Target:  5'- cGCGCGCCGCcgagauuCGUCGCUgcac--CGUa -3'
miRNA:   3'- -CGCGCGGCGu------GCAGCGAaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 202621 0.74 0.860588
Target:  5'- uGCGCGCCGC-CGacUCGCUgccgcagUUGCu -3'
miRNA:   3'- -CGCGCGGCGuGC--AGCGAaaaua--AGCG- -5'
30204 5' -51.1 NC_006273.1 + 188497 0.74 0.863618
Target:  5'- cGCGCGCagccccaGCGCGUCGCguacccggUGCa -3'
miRNA:   3'- -CGCGCGg------CGUGCAGCGaaaauaa-GCG- -5'
30204 5' -51.1 NC_006273.1 + 113151 0.74 0.875407
Target:  5'- gGCGCGCCGCucaGUCGCcuacacccgUAcgCGCa -3'
miRNA:   3'- -CGCGCGGCGug-CAGCGaaa------AUaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 195846 0.74 0.882496
Target:  5'- gGCGCGCgGCAUGUUGCg------CGCc -3'
miRNA:   3'- -CGCGCGgCGUGCAGCGaaaauaaGCG- -5'
30204 5' -51.1 NC_006273.1 + 203914 0.74 0.882496
Target:  5'- aGCGCGCCGCGCGagGUgua-GUggGCg -3'
miRNA:   3'- -CGCGCGGCGUGCagCGaaaaUAagCG- -5'
30204 5' -51.1 NC_006273.1 + 142435 0.74 0.882496
Target:  5'- cGCGCGCgugugCGCGCGUgCGCg--UGUgCGCa -3'
miRNA:   3'- -CGCGCG-----GCGUGCA-GCGaaaAUAaGCG- -5'
30204 5' -51.1 NC_006273.1 + 27154 0.73 0.896006
Target:  5'- cGC-CGCUGC-CGUCGCUac-AUUCGCc -3'
miRNA:   3'- -CGcGCGGCGuGCAGCGAaaaUAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.